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Olen nõus

Jaan Liira

https://etis.ee/CV/Jaan_Liira/est
11.10.1972
524 0798
jaan.liira@ut.ee
G-9879-2015

Teenistuskäik

Töökohad ja ametid
01.01.2021–...   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut, taimeökoloogia kaasprofessor (1,00)
01.10.2017–31.12.2020   
Tartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut, taimeökoloogia vanemteadur (1,00)
2007–2017   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, Taimeökoloogia õppetool, taimeökoloogia vanemteadur (1,00)
01.10.2002–31.07.2007   
Tartu Ülikool, Bioloogia-geograafiateaduskond, Botaanika ja ökoloogia instituut, taimeökoloogia vanemteadur (1,00)
2001–2002   
Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, Taimeökoloogia õppetool, Teadur (1,00)
01.01.2001–31.12.2001   
National Environmental Research Institute, Taani; stipendiaat
01.01.2000–31.12.2001   
Tartu Ülikool, BÖI, vanemlaborant
01.01.1998–31.12.1999   
stipendiaat, Limburgi Ülikool, Belgia
01.01.1997–31.12.1997   
TÜ. BÖI, vanemlaborant
01.01.1996–31.12.1996   
TÜ, BÖI, laborant
 
 
Haridustee
* Tartu Ülikool, 1994, bioloogia erialal
* Teaduste magister taimeökoloogia erialal, MSc (1996 TÜ)
* Teaduste magister biostatistika erialal, MSc (1999, Limburgi Ülikool, Belgia)
* Filosoofiateaduste doktor, PhD (2000, TÜ)
 
 
Teadusorganisatsiooniline ja -administratiivne tegevus
2016−...   
Teaduse tippkeskuse EcolChange liige
1998−...   
Refereeritud artikleid ajakirjadele Annales Botanici Fennici, Applied Vegetation Science, Bulletin of the Geobotanical Institute ETH, Oikos, Journal of Vegetation Science, Ecography, Landscape Ecology.
1998−...   
Eesti Statistika Selts
1997−...   
Eesti Pärandkoolsluste Selts
1992−...   
Eesti LUS
2008−2015   
teaduse tippkeskuse FIBIR liige
1993−2010   
International Association of Vegetaion Science
 
 
Loometöö
Loodusfotograafia ajakirjale Eesti Loodus, Koduaed, õppevahendite kogumikele ja õpikutele
Mürktaimede näitus Eesti Põllumajandusmuuseumis (2006)
 
 
Lisainfo
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Kvalifikatsioon

Teaduskraadid
Jaan Liira, doktorikraad, 2000, (juh) Kristjan Zobel, On the determinants of structure and diversity in herbaceous plant communities (Rohurinde taimekoosluste struktuuri ja mitmekesisust määravad tegurid), Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, Taimeökoloogia õppetool.
Jaan Liira, magistrikraad (teaduskraad), 1999, (juh) Kristjan Zobel; G. Molenberghs, Canopy vertical structure of Estonian herb layer communities (rohurinde-koosluste võra verstikaalne struktuur Eestis), Limburgi Ülikool (Limburgs Universitair Centrum) (Belgia).
Jaan Liira, magistrikraad (teaduskraad), 1996, (juh) Kristjan Zobel, 'The richness-standing biomass relationship in Estonian ground-layer plant communities: scale-independent versus scale-dependent approach (Eesti rohurindekoosluste liigirikkuse ja biomassi vaheline seos: skaalast sõltumatu lähnemisviis), Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut, Taimeökoloogia õppetool.
 
 
Teaduspreemiad ja tunnustused
2012, Jaan Liira, Eesti Vabariigi teaduspreemia põllumajandusteaduste alal uurimuste tsükli „Elurikkuse ja selle funktsioonide seosed ruumiprotsessidega kaasaegses põllumajandusmaastikus” eest
1998, Jaan Liira, Eesti Vabariigi teaduspreemia Martin Zobeli (TÜ) kollektiivis "Taimeliikide kooseksisteerimise ja liigifondi teooria"eest
 
 
Teadustöö põhisuunad
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; TÄPSUSTUS: Rohurinde liigiline mitmekesisus ja seda määravad tegurid * Koosluste rohurinde vertikaalse struktuur * Koosluste biomassi allokatsioon ja seda mõjutavad tegurid
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.4. Ökoloogia, biosüstemaatika ja -füsioloogia; CERCS KLASSIFIKAATOR: B270 Taimeökoloogia
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.5. Metsandusteadus; TÄPSUSTUS: * Koosluste (metsade) loodusliku kvaliteedi, struktuuri ja bioloogilise mitmekesisuse indikaatorid * Metsade kaugseire meetodid
ETIS KLASSIFIKAATOR: 1. Bio- ja keskkonnateadused; 1.6. Põllumajandusteadus; TÄPSUSTUS: * Loodusmaastike fragmentatsiooni ja põllumajandusliku tegevuse mõju looduslike koosluste struktuurile ja dünaamikale.
 
 
Lisainfo
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Jooksvad projektid

Lõppenud projektid

Juhendamisel väitekirjad

Juhendatud väitekirjad

Publikatsioonid

1.1. Teadusartiklid, mis on kajastatud Web of Science andmebaasides Science Citation Index Expanded, Social Sciences Citation Index, Arts & Humanities Citation Index, Emerging Sources Citation Index ja/või andmebaasis Scopus (v.a. kogumikud)
 
Tamme, Riin; Pärtel, Meelis; Kõljalg, Urmas; Laanisto, Lauri; Liira, Jaan; Mander, Ülo; Moora, Mari; Niinemets, Ülo; Öpik, Maarja; Ostonen, Ivika; Tedersoo, Leho; Zobel, Martin (2021). Global macroecology of nitrogen‐fixing plants. Global Ecology and Biogeography, 30, 514−526. DOI: 10.1111/geb.13236.
 
Rünk, Kai; Zobel, Kristjan; Liira, Jaan (2021). Long-term growth of three sympatric Dryopteris fern species shows the accumulation of climatic effects over 2 years because of organ preformation. Climatic Change, 164 (16). DOI: 10.1007/s10584-021-02967-8.
 
Valdes, Alicia; Lenoir, Jonathan; De Frenne, Pieter; Andrieu, Emilie; Brunet, Jorg; Chabrerie, Olivier; Cousins, Sara A. O.; Deconchat, Marc; De Smedt, Pallieter; Diekmann, Martin; Ehrmann, Steffen; Gallet-Moron, Emilie; Gaertner, Stefanie; Giffard, Brice; Hansen, Karin; Hermy, Martin; Kolb, Annette; Le Roux, Vincent; Liira, Jaan; Lindgren, Jessica ... Decocq, Guillaume (2020). High ecosystem service delivery potential of small woodlands in agricultural landscapes. Journal of Applied Ecology, 57 (1), 4−16. DOI: 10.1111/1365-2664.13537.
 
Paal, Taavi; Zobel, Kristjan; Liira, Jaan (2020). Standardized response signatures of functional traits pinpoint limiting ecological filters during the migration of forest plant species into wooded corridors. Ecological Indicators, 108, UNSP 105688. DOI: 10.1016/j.ecolind.2019.105688.
 
Vain, Susanna; Gielen, Iris; Liira, Jaan; Zobel, Kristjan (2020). Population-level performance of Arabidopsis thaliana (L.) Heynh in dense monocultures. Journal of Plant Ecology, 13 (2). DOI: 10.1093/jpe/rtaa006.
 
Liira, J.; Suija, A.; Jüriado, I. (2020). Habitat and host specificity of epiphytic lichens in a rural landscape: cultural heritage habitats as refugia. Biodiversity and Conservation. DOI: 10.1007/s10531-020-01955-1.
 
Ingerpuu, Nele; Kupper, Tiiu; Vellak, Kai; Kupper, Priit; Sõber, Jaak; Tullus, Arvo; Zobel, Martin; Liira, Jaan (2019). Response of bryophytes to afforestation, increase of air humidity, and enrichment of soil diaspore bank. Forest Ecology and Management, 432, 64−72. DOI: 10.1016/j.foreco.2018.09.004.
 
Vanneste, Thomas; Valdes, Alicia; Verheyen, Kris; Perring, Michael P.; Bernhardt-Roemermann, Markus; Andrieu, Emilie; Brunet, Jorg; Cousins, Sara A. O.; Deconchat, Marc; De Smedt, Pallieter; Diekmann, Martin; Ehrmann, Steffen; Heinken, Thilo; Hermy, Martin; Kolb, Annette; Lenoir, Jonathan; Liira, Jaan; Naaf, Tobias; Paal, Taavi; Wulf, Monika ... De Frenne, Pieter (2019). Functional trait variation of forest understorey plant communities across Europe. Basic and Applied Ecology, 34, 1−14.10.1016/j.baae.2018.09.004.
 
Ma, Shiyu; De Frenne, Pieter; Vanhellemont, Margot; Wasof, Safaa; Boeckx, Pascal; Brunet, Jörg; Cousins, Sara A.O.; Decocq, Guillaume; Kolb, Annette; Lemke, Isa; Liira, Jaan; Naaf, Tobias; Orczewska, Anna; Plue, Jan; Wulf, Monika; Verheyen, Kris (2019). Local soil characteristics determine the microbial communities under forest understorey plants along a latitudinal gradient. Basic and Applied Ecology, 36, 34−44.10.1016/j.baae.2019.03.001.
 
Liira, J.; Triisberg-Uljas, T.; Karofeld, E.; Karu, H.; Paal, J. (2019). Does the autoecology of core species reflect the synecology of functional groups during the assembly of vegetation in abandoned extracted peatlands? Mires and Peat, 24 (Article 8), 1−14. DOI: 10.19189/MaP.2018.OMB.342.
 
Kose, Marika; Liira, Jaan; Tali, Kadri (2019). Long-term effect of different management regimes on the survival and population structure of Gladiolus imbricatus in Estonian coastal meadows. Global Ecology and Conservation, 20, e00761. DOI: 10.1016/j.gecco.2019.e00761.
 
De Smedt, Pallieter; Baeten, Lander; Gallet-Moron, Emilie; Brunet, Jorg; Cousins, Sara A. O.; Decocq, Guillaume; Deconchat, Marc; Diekman, Martin; Giffard, Brice; Kalda, Oliver; Liira, Jaan; Paal, Taavi; Wulf, Monika; Hermy, Martin; Verheyen, Kris (2019). Forest edges reduce slug (but not snail) activity-density across Western Europe. Pedobiologia, 75, 34−37. DOI: 10.1016/j.pedobi.2019.05.004.
 
Ma, S.; De Frenne, P.; Wasof, S.; Brunet, J.; Cousins, S.A.O.; Decocq, G.; Kolb, A.; Lemke, I; Liira, J.; Naaf, T.; Orczewska, A.; Plue, J.; Wulf, M.; Verheyen, K. (2019). Plant-soil feedbacks of forest understorey plants transplanted in nonlocal soils along a latitudinal gradient. Plant Biology, 21 (4), 677−687. DOI: 10.1111/plb.12960.
 
Ma, S.; De Frenne, P.; Boone, N.; Brunet, J.; Cousins, S.A.O.; Decocq, G.; Kolb, A.; Lemke, I.; Liira, J.; Naaf, T.; Orczewska, A.; Plue, J.; Wulf, M.; Verheyen, K (2019). Plant species identity and soil characteristics determine rhizosphere soil bacteria community composition in European temperate forests. FEMS Microbiology Ecology, 95 (6), ARTN fiz063. DOI: 10.1093/femsec/fiz063.
 
Blondeel, H.; Perring, M.P.; Berges, L.; Brunet, J.; Decocq, G.; Depauw, L.; Diekmann, M.; Landuyt, D.; Liira, J.; Maes, S.L.; Vanhellemont, M.; Wulf, M.; Verheyen, K. (2019). Context-dependency of agricultural legacies in Temperate forest soils. Ecosystems, 22 (4), 781−795. DOI: 10.1007/s10021-018-0302-9.
 
Ehrmann, Steffen, Ruyts, Sanne C., Scherer-Lorenzen, Michael, Bauhus, Jürgen, Brunet, Jörg, Cousins, Sara A. O., Deconchat, Marc, Decocq, Guillaume, De Frenne, Pieter, De Smedt, Pallieter, Diekmann, Martin, Gallet-Moron, Emilie, Gärtner, Stefanie, Hansen, Karin, Kolb, Annette, Lenoir, Jonathan, Lindgren, Jessica, Naaf, Tobias, Paal, TaaviPanning, Marcus, Prinz, Maren, Valdés, Alicia, Verheyen, Kris, Wulf, Monika, Liira, Jaan (2018).

Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments

. Parasites & Vectors, 11, 23.10.1186/s13071-017-2590-x.
 
De Frenne, P; Blondeel, H; Brunet, J; Carón, M. M; Chabrerie, O; Cougnon, M; Cousins, S. A. O; Decocq, G; Diekmann, M; Graae, B. J; Hanley, M. E; Heinken, T; Hermy, M; Kolb, A; Lenoir, J; Liira, J; Orczewska, A; Shevtsova, A; Vanneste, T.; Verheyen, K. (2018). Atmospheric nitrogen deposition on petals enhances seed quality of the forest herb Anemone nemorosa. Plant Biology, 20 (3), 619−626.10.1111/plb.12688.
 
De Smedt, P.; Baeten, L.; Proesmans, W. Berg, MP.; Brunet, J.; Cousins, S.A.O.; Decocq, G.; Deconchat, M.; Diekmann, M.; Gallet-Moron, E.; Giffard, B.; Liira, J.; Martin, L.; Ooms, A.; Valdés, A.; Wulf, M.; Hermy, M.; Bonte, D.; Verheyen, K. (2018). Linking macrodetritivore distribution to desiccation resistance in small forest fragments embedded in agricultural landscapes in Europe. Landscape Ecology, 33 (3), 407−421.10.1007/s10980-017-0607-7.
 
Kütt, Laura; Paal, Taavi; Lõhmus, Kertu; Rammi, Ilmar-Jürgen; Zobel, Kristjan; Liira; Jaan (2018). Multi‐user quality of floral services along a gradient of margin habitats between semi‐natural grasslands and forests. Applied Vegetation Science, 21 (3), 363−372. DOI: 10.1111/avsc.12376.
 
Takkis, Krista; Kull, Tiiu; Hallikma, Tiit; Jaksi, Piia; Kaljund, Karin; Kauer, Karin; Kull, Thea; Kurina, Olavi; Külvik, Mart; Lanno, Kaire; Leht, Malle; Liira, Jaan; Melts, Indrek; Pehlak, Hannes; Raet, Janar; Sammet, Kaarel; Sepp, Kalev; Väli, Ülo; Laanisto, Lauri (2018). Drivers of species richness and community integrity of small forest patches in an agricultural landscape. Journal of Vegetation Science, 29 (6), 978−988. DOI: 10.1111/jvs.12689.
 
Suija, A.; Liira, J. (2017). Community response to alkaline pollution as an adjusting re-assembly between alternative stable states. Journal of Vegetation Science, 28 (3), 527−537.10.1111/jvs.12506.
 
Paal, Taavi; Kütt, Laura; Lõhmus, Kertu; Liira, Jaan (2017). Both spatiotemporal connectivity and habitat quality limit the immigration of forest plants into wooded corridors. Plant Ecology, 218 (4), 417−431.10.1007/s11258-017-0700-7.
 
Plue, Jan; De Frenne, Pieter; Acharya, Kamal; Brunet, Jörg; Chabrerie, Olivier; Decocq, Guillaume; Diekmann, Martin; Graae, Bente J.; Heinken, Thilo; Hermy, Martin; Kolb, Annette; Lemke, Isgard; Liira, Jaan; Naaf, Tobias; Verheyen, Kris; Wulf, Monika; Cousins, Sara A. O. (2017). Where does the community start, and where does it end? Including the seed bank to reassess forest herb layer responses to the environment. Journal of Vegetation Science, 28 (2), 424−435.10.1111/jvs.12493.
 
Ehrmann, Steffen; Liira, Jaan; Gärtner, S.; Hansen, K.; Brunet, J.; Cousins, S. A. O.; Deconchat, M.; Decocq, G.; De Frenne, P.; De Smedt, P.; Diekmann, M.; Gallet-Moron, E.; Kolb, A.; Lenoir, J.; Lindgren, J.; Naaf, T.; Paal, Taavi; Valdés, A.; Verheyen, K.; Wulf, M. ... Scherer-Lorenzen, M. (2017). Environmental drivers of Ixodes ricinus abundance in forest fragments of rural European landscapes. BMC Ecology, 17 (1), 1−31.10.1186/s12898-017-0141-0.
 
Kraut, A.; Liira, J.; Lõhmus, A. (2016). Beyond a minimum substrate supply: sustaining saproxylic beetles in semi-natural forest management. Forest Ecology and Management, 360, 9−19. DOI: 10.1016/j.foreco.2015.10.016.
 
Kütt, Laura; Lõhmus, Kertu; Rammi, Ilmar-Jürgen; Paal, Taavi; Paal, Jaanus; Liira, Jaan (2016). The quality of flower-based ecosystem services in field margins and road verges from human and insect pollinator perspectives. Ecological Indicators, 70, 409−419. DOI: 10.1016/j.ecolind.2016.06.009.
 
Rünk, Kai; Pihkva, Karin; Liira, Jaan; Zobel, Kristjan (2016). Selection of source material for introduction of the locally rare and threatened fern species Asplenium septentrionale. Plant Ecology & Diversity, 9 (2), 167−173.10.1080/17550874.2016.1182225.
 
Emmerson, M.; Morales, M. B.; Onate, J. J.; Batry, P.; Berendse, F.; Liira, J.; Aavik, T.; Guerrero, I.; Bommarco, R.; Eggers, S.; Part, T.; Tscharntke, T.; Weisser, W.; Clement, L.; Bengtsson, J. (2016). How Agricultural Intensification Affects Biodiversity and Ecosystem Services. In: Advances in Ecological Research (43−97). SAN DIEGO: ELSEVIER ACADEMIC PRESS INC. DOI: 10.1016/bs.aecr.2016.08.005.
 
Valdes, A.; Lenoir, J.; Gallet-Moron, E.; Andrieu, E.; Brunet, J.; Chabrerie, O.; Closset-Kopp, D.; Cousins, S. A. O.; Deconchat, M.; De Frenne, P.; De Smedt, P.; Diekmann, M.; Hansen, K.; Hermy, M.; Kolb, A.; Liira, Jaan; Lindgren, J.; Naaf, T.; Paal, Taavi; Prokofieva, I. ... Decocq, G. (2015). The contribution of patch-scale conditions is greater than that of macroclimate in explaining local plant diversity in fragmented forests across Europe. Global Ecology and Biogeography, 24 (9), 1094−1105.10.1111/geb.12345.
 
Kalda, Oliver; Kalda, Rauno; Liira, Jaan (2015). Multi-scale ecology of insectivorous bats in agricultural landscapes. Agriculture Ecosystems & Environment, 199 (1), 105−113. DOI: 10.1016/j.agee.2014.08.028.
 
Kalda, Rauno; Kalda, Oliver; Lõhmus, Kertu; Liira, Jaan (2015). Multi-scale ecology of woodland bat the role of species pool, landscape complexity and stand structure. Biodiversity and Conservation, 24 (2), 337−353. DOI: 10.1007/s10531-014-0811-6.
 
Leppik, E., Jüriado, I., Suija, A. and Liira, J. (2015). Functional ecology of rare and common epigeic lichens in alvar grasslands. Fungal Ecology, 13, 66−76. DOI: 10.1016/j.funeco.2014.08.003.
 
Jüriado, Inga; Leppik, Ede; Lõhmus, Piret; Randlane, Tiina; Liira, Jaan (2015). Epiphytic lichens on Juniperus communis – an unexplored component of biodiversity in threatened alvar grassland. Nordic Journal of Botany, 33 (2), 128−139. DOI: 10.1111/njb.00650.
 
Winqvist, C.; Bengtsson, J.; Öckinger, E.; Aavik, T.; Berendse, F.; Clement, L.W.; Fischer, C.; Flohre, A.; Geiger, F.; Liira, J., Thies, C.; Tscharntke, T.; Weisser, W.W.; Bommarco, R. (2014). Species’ traits influence ground beetle responses to farm and landscape level agricultural intensification in Europe. Journal of Insect Conservation, 18 (5), 837−846. DOI: 10.1007/s10841-014-9690-0.
 
Vellak, Kai; Liira, Jaan; Karofeld, Edgar; Galanina, Olga; Noskova, Maria; Paal, Jaanus (2014). Drastic turnover of bryophyte vegetation on bog microforms initiated by air pollution in northeastern Estonia and bordering Russia. Wetlands, 34 (6), 1097−1108.10.1007/s13157-014-0569-3.
 
Lõhmus, Kertu; Paal, Taavi; Liira, Jaan (2014). Long-term colonization ecology of forest-dwelling species in a fragmented rural landscape – dispersal versus establishment. Ecology and Evolution, 4 (15), 3113−3126.10.1002/ece3.1163.
 
Liira, Jaan; Jürjendal, Iti; Paal, Jaanus (2014). Do forest plants conform to the theory of island biogeography: the case study of bog islands. Biodiversity and Conservation, 23 (4), 1019−1039.10.1007/s10531-014-0650-5.
 
Triisberg, T; Karofeld, E; Liira, J; Orru, M; Ramst, R; Paal, J. (2014). Microtopography and the properties of residual peat are convenient indicators for restoration planning of abandoned extracted peatlands. Restoration Ecology, 22 (1), 31−39.10.1111/rec.12030.
 
Kohv, Kaupo; Zobel, Martin; Liira, Jaan (2013). The resilience of the forest field layer to anthropogenic disturbances depends on site productivity. Canadian Journal of Forest Research, 43 (11), 1040−1049.10.1139/cjfr-2013-0030.
 
Wasof, S.; Lenoir, J.; Gallet-Moron, E.; Jamoneau, A.; Brunet, J.; Cousins, S. A. O.; de Frenne, P.; Diekmann, M.; Hermy, M.; Kolb, A.; Liira, Jaan; Verheyen, K.; Wulf, M.; Decocq, G. (2013). Ecological niche shifts of understorey plants along a latitudinal gradient of temperate forests in north-western Europe. Global Ecology and Biogeography, 22 (10), 1130− 1140.10.1111/geb.12073.
 
Plue, J.; de Frenne, P.; Acharya, K.; Brunet, J.; Chabrerie, O.; Decocq, G.; Diekmann, M.; Graae, B. J.; Heinken, T.; Hermy, M.; Kolb, A.; Lemke, I.; Liira, Jaan; Naaf, T.; Shevtsova, A.; Verheyen, K.; Wulf, M.; Cousins, S. A. O. (2013). Climatic control of forest herb seed banks along a latitudinal gradient. Global Ecology and Biogeography, 22 (10), 1106−1117.10.1111/geb.12068.
 
Palo, Anneli; Ivask, Mari; Liira, Jaan (2013). Biodiversity composition reflects the history of ancient semi-natural woodland and forest habitats - Compilation of an indicator complex for restoration practice. Ecological Indicators, 34, 336−344. DOI: 10.1016/j.ecolind.2013.05.020.
 
Liira, Jaan; Paal, Taavi (2013). Do forest-dwelling plant species disperse along landscape corridors? Plant Ecology, 214 (3), 455−470.10.1007/s11258-013-0182-1.
 
Lõhmus, Kertu; Liira, Jaan (2013). Old rural parks support higher biodiversity than forest remnants. Basic and Applied Ecology, 14 (2), 165−173. DOI: 10.1016/j.baae.2012.12.009.
 
Leppik, E.; Jüriado, I.; Suija, A.; Liira, J. (2013). The conservation of ground layer lichen communities in alvar grasslands and the relevance of substitution habitats. Biodiversity and Conservation, 22 (3), 591−614. DOI: 10.1007/s10531-012-0430-z.
 
Paal, J.; Degtjarenko, P.; Suija, A.; Liira, J. (2013). Vegetation responses to long-term alkaline cement dust pollution in Pinus sylvestris-dominated boreal forests – niche breadth along the soil pH gradient. Applied Vegetation Science, 16 (2), 248−259. DOI: 10.1111/j.1654-109X.2012.01224.x.
 
Öpik, M.; Zobel, M.; Cantero, J.J.; Davison, J.; Facelli, J.M.; Hiiesalu, I.; Jairus, T.; Kalwij, J.M.; Koorem, K.; Leal, M.E.; Liira, J.; Metsis, M.; Neshataeva, V.; Paal, J.; Phosri, C.; Põlme, S.; Reier, Ü.; Saks, Ü.; Schimann, H.; Thiery, O. ... Moora, M. (2013). Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi. Mycorrhiza, 23 (5), 411−430. DOI: 10.1007/s00572-013-0482-2.
 
Liira, J; Ingerpuu, N; Kalamees, R; Moora, M; Pärtel, M; Püssa, K; Roosaluste, E; Saar, L; Tamme, R; Zobel, K; Zobel, M. (2012). Grassland diversity under changing productivity and the underlying mechanisms – results of a 10-yr experiment. Journal of Vegetation Science, 23 (5), 919−930. DOI: 10.1111/j.1654-1103.2012.01409.x.
 
Guerrero, I.; Morales, M.l B.; Oñate, J. J.; Geiger, F.; Berendse, F.; Snoo, G. de; Eggers, S.; Pärt, T.; Bengtsson, J.; Clement, L. W.; Weisser, W. W.; Olszewski, A.; Ceryngier, P.; Hawro, V.; Liira, J.; Aavik, T.; Fischer, C.; Thies, C.; Tscharntke, T. (2012). Response of ground-nesting farmland birds to agricultural intensification across Europe: Landscape and field level management factors. Biological Conservation, 152, 74−80. DOI: 10.1016/j.biocon.2012.04.001.
 
de Bello, F.; Price, J.N.; Münkemüller, T.; Liira, J.; Zobel, M.; Thuiller, W.; Gerhold, P.; Götzenberger, L.; Lavergne, S.; Leps, J.; Zobel, K.; Pärtel, M. (2012). Functional species pool framework to test for biotic effects on community assembly. Ecology, 93 (10), 2263−2273. DOI: 10.1890/11-1394.1.
 
Jüriado, Inga; Karu, Leelia; Liira, Jaan (2012). Habitat conditions and host tree properties affect the occurrence, abundance and fertility of the endangered lichen Lobaria pulmonaria in wooded meadows of Estonia. The Lichenologist, 44 (2), 263−276. DOI: 10.1017/S0024282911000727.
 
Liira, Jaan; Lõhmus, Kertu; Tuisk, Epp (2012). Old manor parks as potential habitats for forest flora in agricultural landscapes of Estonia. Biological Conservation, 146 (1), 144−154.10.1016/j.biocon.2011.11.034.
 
Guerrero, I.; Morales, M.; Onante, J.J.; Aavik, T.; Bengtsson, J.; Berendse, F.; Clement, L.; Dennis, C.; Eggers, S.; Emmerson, M.; Fischer, C.; Flohre, A.; Geiger, F.; Hawro, V.; Inchausti, P.; Kalamees, A.; Kinks, R.; Liira, J.; Melendez, L.; Pärt, T. ... Weisser, W. (2011). Taxonomic and functional diversity of farmland bird communities across Europe: effects of biogeography and agricultural intensification. Biodiversity and Conservation, 20 (14), 3663−3681. DOI: 10.1007/s10531-011-0156-3.
 
De Frenne, P.; Kolb, A.; Graae, B.J.; Decocq, G.; Baltora, S.; De Schrijver, A.; Brunet, J.; Chabrerie, O.; Cousins, S.A.O.; Dhondt, R.; Diekmann, M.; Gruwez, R.; Heinken, T.; Hermy, M.; Liira, J.; , Saguez, R.; Shevtsova, A.; Baskin, C.C.; Verheyen, K. (2011). A latitudinal gradient in seed nutrients of the forest herb Anemone nemorosa. Plant Biology, 13 (3), 493−501.10.1111/j.1438-8677.2010.00404.x.
 
Thies, C.; Haenke, S.; Schreber, C.; Bengtsson, J.; Bommarco, R.; Clemet, L.W.; Ceryngier, P.; Dennis, C.; Emmerson, M.; Gagic, V.; Hawro, V.; Liira, J.; Weisser, W.W.; Winquist, C.; Tscharntke, T. (2011). The relationship between agricultural intensification and biological control: experimental tests across Europe. Ecological Applications, 21 (6), 2187−2196.10.1890/10-0929.1.
 
Paal, J.; Turb, M.; Köster, T.; Rajandu, E.; Liira, J. (2011). Forest land-use history affects the species composition and soil properties of old-aged hillock forests in Estonia. Journal of Forest Research, 16 (3), 244−252.10.1007/s10310-011-0258-5.
 
Liira, J.; Sepp, T.; Kohv, K. (2011). The ecology of tree regeneration in mature and old forests: combined knowledge for sustainable forest management. Journal of Forest Research, 16 (3), 184−193.10.1007/s10310-011-0257-6.
 
Jüriado, I.; Liira, J.; Csencsics, D.; Widmer, I.; Adolf, C.; Kohv, K.; Scheidegger, C. (2011). Dispersal ecology of the endangered woodland lichen Lobaria pulmonaria in managed hemiboreal forest landscape. Biodiversity and Conservation, 20 (8), 1803−1819. DOI: 10.1007/s10531-011-0062-8.
 
Flohre, A.; Fischer, C.; Aavik, T.; Bengtsson, J.; Berendse, F.; Bommarco, R.; Ceryngier, P.; Clement, L.W.; Dennis, C.; Eggers, S.; Emmerson, M.; Geiger, F.; Guerrero, I.; Hawro, V.; Inchausti, P.; Liira, J.; Morales, M.B.; Oñate, J.J.; Pärt, T.; Weisser, W.W. ... Tscharntke, T. (2011). Agricultural intensification and biodiversity partitioning in European landscapes comparing plants, carabids, and birds. Ecological Applications, 21 (5), 1772−1781.
 
Winqvist, C.; Bengtsson, J.; Aavik, T.; Berendse, F.; Clement, L. W.; Eggers, S.; Fischer, C.; Flohre, A.; Geiger, F.; Liira, J.; Pärt, T.; Thies, C.; Tscharntke, T.; Weisser, W. W.; Bommarco, R. (2011). Mixed effects of organic farming and landscape complexity on farmland biodiversity and biological control potential across Europe. Journal of Applied Ecology, 48, 570−579. DOI: 10.1111/j.1365-2664.2010.01950.x.
 
Leppik, E.; Jüriado, I.; Liira, J. (2011). Changes in stand structure due to the cessation of traditional land use in wooded meadows impoverishes epiphytic lichen communities. The Lichenologist, 43, 257−274.
 
Liira, J.; Feldmann, T.; Mäemets, H.; Peterson, U. (2010). Two decades of macrophytes expansion on the shores of a large shallow northern temperate lake - A retrospective series of satellite images. Aquatic Botany, 93 (4), 207−215. DOI: 10.1016/j.aquabot.2010.08.001.
 
Paal, J.; Vellak, K.; Liira, J.; Karofeld, E. (2010). Bog recovery in Northeastern Estonia after the reduction of atmospheric input. Restoration Ecology, 18, 387−400.10.1111/j.1526-100X.2009.00608.x.
 
Liira, J.; Kohv, K. (2010). Stand characteristics and biodiversity indicators along the productivity gradient in boreal forests: Defining a critical set of indicators for the monitoring of habitat nature quality. Plant Biosystems, 144 (1), 211−220.10.1080/11263500903560868.
 
Geiger, F.; Bengtsson, J.; Berendse, F.; Weisser, Wolfgang W.; Emmerson, M.; Morales, M.B.; Ceryngier, P.; Liira, J.; Tscharntke, T. Winqvist, C.; Eggers, S.; Bommarco, R.; Pärt, T.; Bretagnolle, V.; Plantegenest, M.; Clement, L.W.; Dennis, C.; Palmer, C.; Onate, J.J.; Guerrero, I.; Hawro, V. ... Inchausti, P. (2010). Persistent negative effects of pesticides on biodiversity and biological control potential on European farmland. Basic and Applied Ecology, 11 (2), 97−105. DOI: 10.1016/j.baae.2009.12.001.
 
Aavik, T.; Liira, J. (2010). Quantifying the effect of organic farming, field boundary type and landscape structure on the vegetation of field boundaries. Agriculture Ecosystems & Environment, 135 (3), 178−186. DOI: 10.1016/j.agee.2009.09.005.
 
Liira, J.; Issak, M.; Jõgar, Ü.; Mändoja, M.; Zobel, M. (2009). Restoration management of a floodplain meadow and its cost-effectiveness — the results of a 6-year experiment. Annales Botanici Fennici, 46 (5), 397−408.
 
Hendrickx, F.; Maelfait, J.P.; Desender, K.; Aviron, S.; Bailey, D.; Diekotter, T. ; Lens, L.; Liira, J.; Schweiger, O.; Speelmans, M.; VanDomme, V.; Bugter, R. (2009). Pervasive effects of dispersal limitation on within- and among-community species richness in agricultural landscapes. Global Ecology and Biogeography, 18 (5), 607−616. DOI: 10.1111/j.1466-8238.2009.00473.x.
 
Liira, J.; Sepp, T. (2009). Indicators of structural and habitat natural quality in boreo-nemoral forests along the management gradient. Annales Botanici Fennici, 46 (4), 308−325.
 
Jüriado, I.; Liira, J.; Paal, J. (2009). Diversity of epiphytic lichens in boreo-nemoral forests on the North-Estonian limestone escarpment: the effect of tree level factors and local environmental conditions. The Lichenologist, 41 (1), 81−96. DOI: 10.1017/S0024282909007889.
 
Aavik, T.; Liira, J. (2009). Agrotolerant and high nature-value species - plant biodiversity indicator groups in agroecosystems. Ecological Indicators, 9 (5), 892−901. DOI: 10.1016/j.ecolind.2008.10.006.
 
Jüriado, I.; Liira, J.; Paal, J.; Suija, A. (2009). Tree and stand level variables influencing diversity of lichens on temperate broad-leaved trees in boreo-nemoral floodplain forests. Biodiversity and Conservation, 18 (1), 105−125. DOI: 10.1007/s10531-008-9460-y.
 
Schmidt, T.; Arens, P.; Smulders, M.J.M.; Billeter, R.; Liira, J.; Augenstein, I.; Durka, W. (2009). Effects of landscape structure on genetic diversity of Geum urbanum L. populations in agricultural landscapes. Flora, 204 (7), 549−559. DOI: 10.1016/j.flora.2008.07.005.
 
Ejrnaes, R.; Liira, J.; Poulsen, R.; Nygaard, B. (2008). When has an abandoned field become a semi-natural grassland or heathland? Environmental Management, 42 (4), 707−716. DOI: 10.1007/s00267-008-9183-6.
 
Aavik, T.; Jõgar, Ü.; Liira, J.; Tulva, I.; Zobel, M. (2008). Plant diversity in a calcareous wooded meadow – management continuity and colonization debt. Journal of Vegetation Science, 19 (4), 475−484. DOI: 10.3170/2008-8-18380.
 
Aavik, T.; Augenstein, I.; Bailey, D.; Herzog, F.; Zobel, M.; Liira, J. (2008). What is the role of local landscape structure in the vegetation composition of field boundaries? Applied Vegetation Science, 11 (3), 375−386. DOI: 10.3170/2008-7-18486.
 
Gerhold, P.; Pärtel, M.; Liira, J.; Zobel, K.; Prinzing, A. (2008). Phylogenetic structure of local communities predicts the size of the regional species pool. Journal of Ecology, 96 (4), 709−712. DOI: 10.1111/j.1365-2745.2008.01386.x.
 
Liira, J.; Schmidt, T.; Aavik, T.; Arens, P.; Augenstein, I.; Bailey, D.; Billeter, R.; Bukacek, R.; Burel, F.; De Blust, G.; de Cock, R.; Dirksen, J.; Edwards, P.J.; Hamersky, R.; Herzog, F.; Klotz, S.; Kuhn, I.; Le Coeur, D.; Miklova, P.; Roubalova, M. ... Zobel, M. (2008). Plant functional group composition and large-scale species richness in European agricultural landscapes. Journal of Vegetation Science, 19 (1), 3−14.
 
Billeter, R.; Liira, J.; Bailey, D.; Bugter, R.; Arens, P.; Augenstein, I.; Aviron, S.; Baudry, J.; Bukacek, R.; Burel, F.; Cerny, M.; De Blust, G.; de Cock, R.; Diekoetter, T.; Dietz, H.; Dirksen, J.; Dormann, C.; Durka, W.; Frenzel, M.; Hamersky, R. ... Edwards, P. J. (2008). Indicators for biodiversity in agricultural landscapes: a pan-European study. Journal of Applied Ecology, 45 (1), 141−150. DOI: 10.1111/j.1365-2664.2007.01393.x.
 
Dormann, C. F.; Schweiger, O.; Arens, P.; Augenstein, I.; Aviron, S; Bailey, D.; Baudry, J.; Billeter, R.; Bugter, R.; Bukacek, R.; Burel, F.; Cerny, M.; Cock, R. D.; Blust, G. D.; DeFilippi, R.; Diekotter, T.; Dirksen, J.; Durka, W.; Edwards, P. J.; Frenzel, M. ... Zobel, M. (2008). Prediction uncertainty of environmental change effects on temperate European biodiversity. Ecology Letters, 11 (3), 235−244. DOI: 10.1111/j.1461-0248.2007.01142.x.
 
Dormann, C. F.; Schweiger, O.; Augenstein, I.; Bailey, D.; Billeter, R.; De Blust, G.; DeFilippi, R.; Frenzel, M.; Hendrickx, F.; Herzog, F.; Klotz, S.; Liira, J.; Maelfait, J.P.; Schmidt, T.; Speelmans, M.; van Wingerden, W. K. R. E.; Zobel, M. (2007). Effects of landscape structure and land-use intensity on similarity of plant and animal communities. Global Ecology and Biogeography, 16 (6), 774−787. DOI: 10.1111/j.1466-8238.2007.00344.x.
 
Schweiger, O.; Musche, M.; Bailey, D.; Billeter, R.; Diekotter, T.; Hendrickx, F.; Herzog, F.; Liira, J.; Maelfait, J.-P.; Speelmans, M.; Dziock, F. (2007). Functional richness of local hoverfly communities (Diptera, Syrphidae) in response to land use across temperate Europe. Oikos, 116, 3, 461−472. DOI: 10.1111/j.2007.0030-1299.15372.x.
 
Liira, J.; Sepp, T.; Parrest, O. (2007). The forest structure and ecosystem quality in conditions of anthropogenic disturbance along productivity gradient. Forest Ecology and Management, 250, 34−46.
 
Pärtel, M.; Helm, A.; Reitalu, T.; Liira, J.; Zobel, M. (2007). Grassland diversity related to the Late Iron Age human population density. Journal of Ecology, 95 (3), 574−582. DOI: 10.1111/j.1365-2745.2007.01230.x.
 
Moora, M.; Daniell, T.J.; Kalle, H.; Liira, J.; Püssa, K.; Roosaluste, H.; Öpik, M.; Wheatley, R.; Zobel, M. (2007). Spatial pattern and species richness of boreonemoral forest understorey and its determinants – a comparison of differently managed forests. Forest Ecology and Management, 250, 64−70.
 
Hendrickx, F.; Maelfait, J.P.; van Wingerden, W.; Schweiger, O.; Speelmans, M.; Aviron, S.; Augenstein, I.; Billeter, R.; Bailey, D.; Bukacek, R.; Burel, F.; Diekotter, T.; Dirksen, J.; Herzog, F.; Liira, J.; Roubalova, M.; VanDomme, V.; Bugter, R. (2007). How landscape structure, land-use intensity and habitat diversity affect components of total arthropod diversity in agricultural landscapes. Journal of Applied Ecology, 44 (2), 340−351. DOI: 10.1111/j.1365-2664.2006.01270.x.
 
Öpik, M.; Moora, M.; Liira, J.; Zobel, M. (2006). Composition of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe. Journal of Ecology, 94 (4), 778−790.
 
Liira, J.; Püssa, K.; Peterson, U. (2006). The radiance contrast of forest-to-clearcut edges on a medium resolution Landsat Enhanced Thematic Mapper satellite winter image. International Journal of Remote Sensing, 27 (13), 2753−2766.
 
Jüriado, I.; Suija, A.; Liira, J. (2006). Biogeographical determinants of lichen species diversity on islets in the West-Estonian Archipelago. Journal of Vegetation Science, 17 (2), 125−134.
 
Herzog, F.; Steiner, B.; Bailey, D.; Baudry, J.; Billeter, R.; Bukacek, R.; De Blust, G.; De Cock, R.; Dirksen, J.; Dormann, CF.; De Filippi, R.; Frossard, E.; Liira, J.; Schmidt, T.; Stockli, R.; Thenail, C.; van Wingerden, W.; Bugter, R. (2006). Assessing the intensity of temperate European agriculture at the landscape scale. European Journal of Agronomy, 24 (2), 165−181.
 
Zobel, M.; Otsus, M.; Runk, K.; Liira, J. (2005). Can long-distance dispersal shape the local and regional species pool? Folia Geobotanica, 40 (1), 35−44.
 
Ingerpuu, N.; Liira, J.; Partel, M. (2005). Vascular plants facilitated bryophytes in a grassland experiment. Plant Ecology, 180 (1), 69−75.
 
Pussa, K.; Liira, J.; Peterson, U. (2005). The effects of successional age and forest site type on radiance of forest clear-cut communities. Scandinavian Journal of Forest Research, 20, 79−87.
 
Meier, E.; Paal, J.; Liira, J.; Juriado, I. (2005). Influence of tree stand age and management on the species diversity in Estonian eutrophic alvar and boreo-nemoral Pinus sylvestris forests. Scandinavian Journal of Forest Research, 20, 135−144.
 
Puidet, E.; Liira, J.; Paal, J.; Partel, M.; Pihu, S. (2005). Morphological variation in eight taxa of Anthyllis vulneraria s. lato (Fabaceae). Annales Botanici Fennici, 42 (4), 293−304.
 
Lepik, M.; Liira, J.; Zobel, K. (2005). High shoot plasticity favours plant coexistence in herbaceous vegetation. Oecologia, 145 (3), 465−474.
 
Kohv, K.; Liira, J. (2005). Anthropogenic effects on vegetation structure of the boreal forest in Estonia. Scandinavian Journal of Forest Research, 20, 122−134.
 
Schweiger, O.; Maelfait, JP.; Van Wingerden, W.; Hendrickx, F.; Billeter, R.; Speelmans, M.; Augenstein, I.; Aukema, B.; Aviron, S.; Liira, J. (2005). Quantifying the impact of environmental factors on arthropod communities in agricultural landscapes across organizational levels and spatial scales. Journal of Applied Ecology, 42 (6), 1129−1139.
 
Lepik, M.; Liira, J.; Zobel, K. (2004). The space-use strategy of plants with different growth forms, in a field experiment with manipulated nutrients and light. Folia Geobotanica, 39 (2), 113−127.
 
Peterson, U.; Pussa, K.; Liira, J. (2004). Issues related to delineation of forest boundaries on Landsat Thematic Mapper winter images. International Journal of Remote Sensing, 25 (24), 5617−5628.
 
Jüriado, I.; Paal, J.; Liira, J. (2003). Epiphytic and epixylic lichen species diversity in Estonian natural forests. Biodiversity and Conservation, 12, 1587−1607.
 
Vellak, K.; Paal, J.; Liira, J. (2003). Diversity and distribution pattern of bryophytes and vascular plants in a boreal spruce forest. Silva Fennica, 37 (1), 3−13.
 
Cantero, JJ.; Liira, J.; Cisneros, JM.; Gonzalez, J.; Nunez, C.; Petryna, L.; Cholaky, C.; Zobel, M. (2003). Species richness, alien species and plant traits in Central Argentine mountain grasslands. Journal of Vegetation Science, 14 (1), 129−136.
 
Opik, M.; Moora, M.; Liira, J.; Koljalg, U.; Zobel, M.; Sen, R. (2003). Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils. New Phytologist, 160 (3), 581−593.
 
Ingerpuu, N.; Vellak, K.; Liira, J.; Partel, M. (2003). Relationships between species richness patterns in deciduous forests at the north Estonian limestone escarpment. Journal of Vegetation Science, 14 (5), 773−780.
 
Liira, J.; Zobel, K.; Magi, R.; Molenberghs, G. (2002). Vertical structure of herbaceous canopies: the importance of plant growth-form and species-specific traits. Plant Ecology, 163 (1), 123−134.
 
Liira, J.; Zobel, K. (2000). The species richness-biomass relationship in herbaceous plant communities: what difference does the incorporation of root biomass data make? Oikos, 91 (1), 109−114.
 
Partel, M.; Zobel, M.; Liira, J.; Zobel, K. (2000). Species richness limitations in productive and oligotrophic plant communities. Oikos, 90 (1), 191−193.
 
Liira, J.; Zobel, K. (2000). Vertical structure of a species-rich grassland canopy, treated with additional illumination, fertilization and mowing. Plant Ecology, 146 (2), 185−195.
 
Zobel, M.; Otsus, M.; Liira, J.; Moora, M.; Mols, T. (2000). Is small-scale species richness limited by seed availability or microsite availability? Ecology, 81 (12), 3274−3282.
 
Zobel, M.; Pilt, I.; Moora, M.; Partel, M.; Liira, J. (1999). Small-scale dynamics of plant communities in an experimentally polluted and fungicide-treated subarctic birch-pine forest. Acta Oecologica, 20 (1), 29−37.
 
Zobel, K.; Liira, J. (1997). A scale-independent approach to the richness vs biomass relationship in ground-layer plant communities. Oikos, 80 (2), 325−332.
1.2. Teadusartiklid teistes rahvusvahelistes teadusajakirjades, millel on registreeritud kood, rahvusvaheline toimetus, rahvusvahelise kolleegiumiga eelretsenseerimine, rahvusvaheline levik ning kättesaadavus ja avatus kaastöödele
 
Decocq, G; Andrieu, E; Brunet, J; Chabrerie, O; De Frenne, P; De Smedt, P; Deconchat, M; Diekmann, M; Ehrmann, S; Giffard, B; Gorriz Mifsud, E; Hansen, K; Hermy, M; Kolb, A; Lenoir, J; Liira, J; Moldan, F; Prokofieva, I; Rosenqvist, L; Varela, E ... Wulf, M (2016). Ecosystem services from small forest patches in agricultural landscapes. Current Forestry Reports, 2 (1), 30−44. DOI: 10.1007/s40725-016-0028-x.
 
Palo, A.; Hoder, D; Liira, J. (2011). Re-evaluation of stand indicators for the assessment of the representativity status of the Natura 2000 habitat type forests. Estonian Journal of Ecology, 60 (3), 209−224.
 
Jüriado, I.; Liira, J. (2010). Threatened forest lichen Lobaria pulmonaria – its past, present and future in Estonia. Forestry Studies / Metsanduslikud Uurimused, 53, 15−24. DOI: 10.2478/v10132-011-0086-6.
 
Jüriado, I.; Liira, J. (2009). Distribution and habitat ecology of the threatened forest lichen Lobaria pulmonaria in Estonia. Folia Cryptogamica Estonica, 46, 55−65.
 
Sepp, T.; Liira, J. (2009). Vanade salumetsade rohurinde koosseis ja seda mõjutavad tegurid. Metsanduslikud uurimused = Forestry studies, 50, 23−41.
 
Liira, J.; Aavik, T.; Parrest, O.; Zobel, M. (2008). Agricultural sector, rural environment and biodiversity in the central and eastern European EU member states. Landscape & Environment, 2 (1), 46−64.
 
Öpik, M.; Moora, M.; Liira, J.; Rosendahl, S.; Zobel, M. (2006). Comparison of communities of arbscular mycorrhizal fungi in roots of two Viola species. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 55 (1), 3−14.
1.3. Eelretsenseeritud teadusartiklid Eesti ja teiste riikide eelretsenseeritavates teadusajakirjades, millel on kohalik toimetuskolleegium, või eelretsenseeritud teadusartiklid Eesti kultuurile olulistes ajakirjades või teadusartiklid ajakirjades Akadeemia, Looming ja Vikerkaar.
 
Kull, Tiiu; Liira, Jaan (2011). Eesti elustiku uuringutest viimastel aastakümnetel. Kull, Tiiu; Liira, Jaan; Sammul, Marek (Toim.). Eesti Looduseuurijate Seltsi aastaraamat (176−178).. Tartu: Eesti Looduseuurijate Selts.
2.1. Monograafiad
 
Toom, Mare; Liira, Jaan; Thea, Kull (2016). Tarnad. Eesti Loodusfoto.
3.2. Artiklid/peatükid lisas mitte loetletud kirjastuste välja antud kogumikes
 
Liira, Jaan (2012). Mõisaparkide loodusväärtus tänapäeva maastikus. Tammet, T (Toim.). Eesti parkide almanahh 3 (70−73).. Tallinn: Eesti Keskkonnaministeerium.
 
Liira, Jaan; Peterson, Urmas (2011). Kahe seisundi mõõtmisel moodustunud bimodaalse ühisjaotuse klassifitseerimine. Eesti Statistikaseltsi teabevihik, 21, 8−15.
 
Peterson, Urmas; Liira, Jaan; Budenkova, Julia; Kiviste, Andres (2006). Forest cover changes since mid 1980s in the Eastern Baltic Region, evaluated with multitemporal Landsat imagery. Patterns and Processes in Forest Landscapes. Consequences of human management: 4th Meeting of IUFRO Working Party 8.01.03, Sept. 26-29, Locorotondo, Bari, Italy. Ed. Raffaele Lafortezza and Giovanni Sanesi. Firenze: Accademia Italiana di Scienze Forestali, 393−397.
3.3. Spetsiifilised teadusväljaanded (sõnaraamatud, leksikonid, atlased, määrajad, tekstikriitilised väljaanded);
 
Liira, J.; Settele, J.; Zobel, M. (2010). European Biodiversity and Its Drivers – an "Inter-national" Analysis. In: Settele, J; Penev, L.D.; Georgiev, T.A.; GRabaum, R.; Grobelnik, V.; Hammen, V.; Klotz, S.; Kotarac, (Ed.). Atlas of biodiversity risk (18−21).. Sofia: PENSOFT Publisher.
 
Liira, J. (2009). Olemasolevate koosluste seiremetoodikate hindamine ning soovitusi Natura2000 elupaikade seisundi seiremetoodika edendamiseks. Tartu: Tartu Ülikooli Kirjastus.
3.4. Artiklid/ettekanded, mis on avaldatud valdkonda 3.1. mittekuuluvates konverentsikogumikes
 
Peterson, Urmas; Liira, Jaan (2012). MONITORING OF FOREST AREA CHANGES USING SNOW COVERED SATELLITE IMAGERY IN NORTHERN EUROPE. Proceedings of International Scientific Conference Forests in the Future – Sustainable Use, Risks and Challenges: International Scientific Conference Forests in the Future – Sustainable Use, Risks and Challenges, 4-5 October 2012, Belgrade, Republic of Serbia. Ed. Ljubinko Rakonjac. Belgrade, Republic of Serbia: Institute of Forestry, Belgrade, Serbia, 123−129.
 
Peterson, U.; Liira, J.; Püssa, K. (2005). Rates and patterns of forest cover change since the mid-1980s in the Eastern Baltic region, evaluated with multitemporal Landsat imagery. Proceedings of ForestSat 2005 in Boras, May 31 - June 3. Ed. by Hakan Olsson. Swedish National Board of Forestry. 18−22.
 
Püssa, K.; Liira, J.; Peterson, U. (2005). Transitional and abrupt edges of forest to non-forest boundaries on medium resolution Landsat TM winter images. Proceedings of ForestSat 2005 in Boras, May 31 - June 3.Ed. by Hakan Olsson. Swedish National Board of Forestry. 79−83.
4.1. Kogumike ja ajakirja erinumbrite toimetamine, mis vastavad punktides 1.1, 1.2, 3.1 või 3.2 esitatud nõuetele
 
Kull, Tiiu; Liira, Jaan; Sammul, Marek (2011). Eesti Looduseuurijate aastaraamat: Haruldused Eesti looduses. Tartu: Eesti Looduseuurijate Selts.
5.1. Konverentsiteesid, mida kajastab Thomson Reuters Web of Science
 
Kardakov, A.; Budenkova, J.; Liira, J; Peterson, U. (2014). Farmland abandonment and forest area increase in northeastern Europe. Book of Abstracts: International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change": International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change", August 11-14, 2014, Tartu, Estonia. Ed. Kangur, Ahto; Metslaid, Marek; Moser, W. Keith; Trei, Piret. Tartu: Eesti Maaülikool, 45−45. (40).
 
Budenkova, J.; Kardakov, A.; Liira, J.; Peterson, U. (2014). Cross-border comparison of forest cover changes in northeastern Europe caused by clear-cutting. Book of Abstracts: International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change": International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change", August 11-14, 2014, Tartu, Estonia. Ed. Kangur, Ahto; Metslaid, Marek; Moser, W. Keith; Trei, Piret. Tartu: Eesti Maaülikool, 22−22. (40).
5.2. Konverentsiteesid, mis ei kuulu valdkonda 5.1
 
Vellak, K; Karofeld, E; Liira, J; Paal, J. (2013). Effect of air pollution on bryophyte vegetation of bogs in NE Estonia and NW Russia. Wetland Systems: Ecology, Functioning and Management.: 2013 SWS European Chapter Meeting International Conference "Wetland Systems: Ecology, Functioning and Management"; Padova, Italy; 1-1 September 2013.. Ed. Borin, M; Malagoli, M; Salvato, M; Tanis, B. Padova, 35−36.
 
Jüriado, I.; Leppik, E.; Suija, A.; Liira, J. (2013). The maintenance of the diversity of ground-layer lichens in alvar grasslands and alvar-like habitats. Vegetation patterns & their underlying processes. Abstracts.: 56th IAVS Symposium. 26-30 June 2013, Taru, Estonia. Ed. Püssa, K.; Kalamees, R.; Hallop, K. Tartu, 100.
 
Roosaluste, Elle; Riibak, Kersti; Liira, Jaan; Zobel, Martin (2013). Effects of different management regimes on the herb layer of grassland community. 56th IAVS Symposium. Vegetation Patterns and their Underlying Processes. ABSTRACTS.
 
Liira, Jaan; Lõhmus, Kertu (2012). Conservation value indicators of forests and forest-like habitats in historic agricultural landscapes. Forest in future. Sustainable use, risks and challenges. Serbia 4.-5. oktoober 2012. Ed. Rakonjac, L. Belgrade, Serbia,.
 
Liira, Jaan; Lõhmus, Kertu; Kalda, Rauno; Suija, Ave; Jüriado, Inga; Jürjendal, Iti (2012). Biodiversity in Estonian manor parks. Devepark final conference, Alatskivi, Eesti, 29.07.2012.
 
Lõhmus, Kertu; Liira, Jaan (2012). Conservation value indicators of forests and forest-like habitats in historic agricultural landscapes. The 55th Symposium of the International Association for Vegetation Science, Korea, Mokpo, 2012. Ed. Lee, E.J.; Kang, H.; Cho, K.H.; Son, Y.; Oh, J.G.; Cho, D.S.; Kim, J.W.; Hong, S.K. 196.
 
Leppik, E., Jüriado, I., Suija, A., Liira, J. (2012). Changes in epigeic lichen communities in calcareous grasslands (alvars) due to the cessation of traditional land use. Abstracts. The 7th IAL Symposium. Lichens: from genome to ecosystems in a changing world: The 7th International Association for Lichenology Symposium 2012, Chaophya Park Hotel, Bangkok, Thailand, 9th-13th January 2012. Bankok, Thailand: Ramkhamhaeng University Press, 59.
 
Liira, Jaan; Lõhmus, Kertu (2011). Old manor parks - from cultural heritage to biodiversity conservation. 54th Symposium of the International Association for Vegetation Science, Lyon, Prantsusmaa, 2011. Ed. Bornette, G.; Puijalon, S.
 
Lõhmus, Kertu; Liira, Jaan (2011). The usage of woody habitats by forest plants in historically fragmented landscapes. 54th Symposium of the International Association for Vegetation Science, Lyon, Prantsusmaa, 2011. Ed. Bornette, G.; Puijalon, S.
 
Müür, Mari; Liira, Jaan; Sillasoo, Ülle, Ingerpuu, Nele; Vellak, Kai (2011). Species diversity in mire communities with changed hydrology. 27.
 
Jüriado, I., Leppik, E.; Liira, J.; Suija, A. (2011). Factors controlling the diversity of ground-layer lichens on alvars of western Estonian islands. 54th Symposium of the International Association for Vegetation Science. Vegetation in and around water: patterns, processes and threats.: 54th Symposium of the International Association for Vegetation Science, June 20 - 24, 2011, Lyon, France. Ed. Bornette, G.; Puijalon, S. Universite Claude Bernard. Lyon 1, 161.
 
Palo, A.; Liira, J.; Hoder, D. (2010). Kvaliteediastmete eristamisest loodusdirektiivi metsaelupaigatüüpides. XI Eesti Ökoloogiakonverents „Elurikkus ja ökosüsteemid“ 8.-9. aprillil 2010 Tartus.. http://www.lote.ut.ee/geo/okoloogiakonverents.
 
Jüriado, I.; Liira, J. (2010). Distribution and habitat ecology of the threatened forest lichen Lobaria pulmonaria in Estonia. Proceedings of the Conference Nature Conservation Beyond 2010: Nature Conservation Beyond 2010; Tallinn, Estonia; May 27-29, 2010. Tallinn, 37−38.
 
Liira, J.; Lõhmus, K.; Tuisk, E.; Vellak, K.; Jüriado, I.; Suija, A. (2010). Old manor parks - from cultural heritage to refugia of biodiversity. Proceedings of the Conference Nature Conservation Beyond 2010: Nature Conservation Beyond 2010. May 27-29, Tallinn, 2010. Tallinn, 29−30.
 
Jüriado, I.; Liira, J.; Csencsics, D.; Widmer, I; Adolf, C.; Kohv, K.; Scheidegger, C. (2010). The genetic diversity of Lobaria pulmonaria in woodland habitats of different management history. 9th International Mycological Congress. IMC9: The Biology of Fungi.: 9th International Mycological Congress.1st-6th August, 2010. Edinburgh, Scotland.
 
Lõhmus, K.; Tuisk, E.; Vellak, K.; Jüriado, I.; Suija, A.; Liira, J. (2010). Old manor parks - seminatural forest communities. XXIII Conference-Expedition of the Baltic Botanists. Abstracts & Excursion Guides.: XXIII Conference-Expedition of the Baltic Botanists. Haapsalu, Estonia, July 19-22, 2010. Toim. M. Abakumova, N. Ingerpuu, R. Kalamees, K. Püssa. Tartu, 35−36.
 
Leppik, E.; Jüriado, I.; Suija, A.; Liira, J. (2010). Ground-layer lichen communities on alvars of western Estonian islands. XXIII Conference-Expedition of the Baltic Botanists. Abstracts & Excursion Guides.: XXIII Conference-Expedition of the Baltic Botanists; Haapsalu, Estonia; July 19-22, 2010. Ed. Abakumova, M; Ingerpuu, N; Kalamees, N; Püssa, K. Tartu, 34−35.
 
Jüriado, I.; Liira, J.; Karu, L. (2010). Endangered epiphytic lichen Lobaria pulmonaria along a gradient of different light conditions in semi-natural woodlands. Changing Gradients in Vegetation and the Environment. Abstracts.: International Association for Vegetation Science. 53th International Symposium. Ensenada, Baja California, Mexico, 18-23 April 2010. , 43.
 
Peterson, Urmas; Liira, Jaan; Feldmann, Tõnu; Mäemets, Helle (2009). Patterns and dynamics of coastal vegetation in two great shallow Baltic lakes in multi-temporal satellite images. 2nd European Large Lakes Symposium 2009, Programme and Abstracts: 2nd European Large Lakes Symposium 2009. Vulnerability of large lake ecosystems - monitoring, management and measures. Norrtälje, August 10-14. Uppsala, 11−11.
 
Leppik, E.; Jüriado, I.; Liira, J. (2009). Epiphytic lichen communities reflect the changes of management intensity in wooded meadows of Estonia. International Association for Vegetation Science "Vegetation Processes and Human Impact in a Changing World" Abstracts: 52nd International Symposium, International Association for Vegetation Science; Chania, Greece; 30.05- 4.06.2009. Ed. Coles, S.; Dimopoulos, P. Wiley-Blackwell, 194.
 
Jüriado, I.; Liira, J.; Paal, J.; Suija, A. (2008). Diversity of epiphytic lichens in boreo-nemoral forests in northern Europe: the effect of substrate-related factors and stand environmental conditions. XVII Symposium of the Baltic mycologists and Lichenologists, Abstracts: XVII Symposium of the Baltic mycologists and Lichenologists; Estonia, Saaremaa, Mändjala; 17-21 September 2008. Ed. Saar, I.; Suija, A. Tartu University Publishing, 22.
 
Aavik, T.; Liira, J. (2008). The vegetation of agroecosystems – the role of land use and landscape structure. EURECO-GFOE 2008. Proceedings: EURECO-GFOE 2008. Biodiversity in an Ecosystem Context; Leipzig; 15-19. Sep 2008. Ed. Stadler, J.; Schöppe, F.; Frenzel, M., 737−737.
 
Gerhold, P.; Pärtel, M.; Liira, J.; Zobel, K.; Prinzing, A. (2008). Phylogenetic structure of local communities predicts the size of the regional species pool. Frontiers of Vegetation Science - An Evolutionary Angle: 51st Annual Symposium of the International Association for Vegetation Science. Stellenbosch, South Africa. September 7-12. Toim. Mucina, L.; Kalwij, J.M.; Smith, V.R., pp. 59−60.
 
Aavik, T.; Jõgar, Ü.; Liira, J.; Tulva, I.; Zobel, M. (2008). Plant species composition and diversity in a calcareous wooded meadow - the significance of management continuity. Abstract Book: 6th European Conference on Ecological Restoration. Towards a sustainable future for European ecosystems; Ghent, Belgium: 6th European Conference on Ecological Restoration. Towards a sustainable future for European ecosystems; Ghent, Belgium; 8-12.09.2008. , 153−153.
 
Aavik, T.; Zobel, M.; Liira, J. (2007). The influence of landscape structure on the field margin vegetation of Estonian agricultural landscapes. Book of Abstracts: 49th Annual Conference of the IAVS – New Zealand: New Zealand: New home; new habitat! new ideas? 49th Annual Conference of the IAVS; New Zealand; 12-16.02.2007. Ed. van Essen, R. A., 95−95.
 
Meier, E.; Paal, J. (2007). Cryptogams in Estonian alvar forests: species composition and their substrata in stands of different age and management intensity. Ecological Complexity and Sustainability – Challenges & Opportunities for 21st Century’s Ecology. Abstracts of EcoSummit 2007: EcoSummit 2007; Beijing, China; 22-27.05.2007. Ecological Society of China & Elsevier, 224.
 
Aavik, T.; Zobel, M.; Liira, J. (2007). The effects of landscape structure on the vegetation of field boundaries in Estonia. Proceedings of the 7th IALE World Congress: International Association of Landscape Ecology 2007. 25 Years of Landscape Ecology: Scientific Principles in Practise; Wageningen, Holland; 8-12 July 2007. Ed. Bunce, R.G.H.; Jongman, R.H.G.; Hojas, L.; Weel, S.
 
Meier, Elle; Paal, Jaanus; Liira, Jaan (2004). The influence of stand age and management on species diversity in alvar and boreo-nemoral forests. Natural disturbances and ecosystem-based forest management: proceedings of the international conference: Tartu, Estonia, 27-29 May 2004. Ed. Ahto Kangur. Eesti Põllumajandusülikool, 31−32.
 
Jüriado, I.; Suija, A.; Liira, J. (2004). The environmental factors determining the lichen species richness on islets in the West-Estonian Arhipelago. Book of abstracts of the 5th IAL Symposium "Lichens in Focus": The 5th Symposium of the International Association for Lichenology; Tartu, Estonia; 16-21 August 2004. Toim. Randlane, T.; Saag, A. Tartu Ülikooli Kirjastus, 56.
 
Meier, E.; Paal, J.; Liira, J. (2004). The influence of stand age and management on species diversity in alvar and boreo-nemoral forests. In: Kangur, A. (Ed.). Natural disturbances and ecosystem-based forest management. Proceedings of the International Conference, Tartu, Estonia, 27-29 May 2004 (31−32). Tartu.
6.2. Õpikud ja muud õppeotstarbelised publikatsioonid, v.a. kõrgkooliõpikud;
 
Toom, Mare; Liira, Jaan; Värva, Mall; Ling, Katri; Usler, Marko; Kollist, Ülle; Oja, Tatjana (2006). Metsataimed: Pildikomplekt. Tallinn: Avita.
 
Jõgar, Ülle; Maiste, Piia; Koskaru, Neeme; Liira, Jaan; Paal, Jaanus; Sell, Indrek; Usler, Marko; Hunt, Tiit; Ling, Katri (2006). Vee- ja kaldataimed: pildikomplekt. Tallinn: Avita.
 
Palumets, J.; Hunt, T.; Vissak, P.; Paal, J.; Kask, E.; Liira, J.; Kollist, Ü.; Oja, T. (2006). Sootaimed: pildikomplekt. Tallinn: Avita.
6.3. Populaarteaduslikud artiklid;
 
Liira, Jaan (2016). Pargi loodusväärtuslikkus ja selle edendamine. Palm, P.; Sinijärv, U.; Tammet, T. (Toim.). Eesti parkide almanahh 4 (58−59). Tallinn: Muinsuskaitseamet.
 
Aavik, T; Liira, J. (2009). Kuhu küll kõik lilled jäid? Põlluservade tähtsusest. Eesti Loodus, 7, 46−49.
 
Peterson, Urmas; Liira, Jaan; Püssa, Kersti (2008). Metsaga alade ning lageraiete ja nendega sarnaste häiringute kaugseire. Katrin Väljataga, Karmen Kaukver (Toim.). Kaugseire Eestis (48−68).. Tallinn: Iloprint.
 
Liira, Jaan (2008). Looduse kood. Kodukiri, Märts, 38−42.
6.4. Populaarteaduslikud raamatud;
 
Kalda, Rauno; Liira, Jaan (2016). Nahkhiirte maastik. Palm, P.; Sinijärv, U.; Tammet, T. (Toim.). Eesti parkide almanahh 4 (70−72). Tallinn: Muinsuskaitseamet.
6.7. Muu loome
 
Aavik, T.; Liira, J. (2016). Põllumajanduspoliitika ei suuda pidurdada elurikkuse hüvede kadu. Novaator | ERR.
 
Zobel, M.; Zobel, K.; Pärtel, M.; Moora, M.; Liira, J. (1998). Taimede kooselu - miks liigiline mitmekesisus looduses varieerub? Eesti Vabariigi teaduspreemiad (46−53).. Tallinn: Eesti Teaduste Akadeemia Kirjastus.
6.8. Lühikirjutised teadusajakirjades ja kogumikes
 
Jüriado, I.; Liira, J.; Paal, J. (2009). Diversity of epiphytic lichens in boreo-nemoral forests on the North-Estonian limestone escarpment: the effect of tree level factors and local environmental conditions – ERRATUM. The Lichenologist, 41 (2), 211−211. DOI: 10.1017/S0024282909009190.
2.02.2021

Jaan Liira

https://etis.ee/CV/Jaan_Liira/eng
11.10.1972
524 0798
jaan.liira@ut.ee
G-9879-2015

Career

Institutions and positions
01.01.2021–...   
University of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences, Associate Professor of Plant Ecology (1,00)
01.10.2017–31.12.2020   
University of Tartu, Faculty of Science and Technology, Institute of Ecology and Earth Sciences, Senior Research Fellow of Plant Ecology (1,00)
2007–2017   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Chair of Plant Ecology, senior research fellow of plant ecology (1,00)
01.10.2002–31.07.2007   
University of Tartu, Faculty of Biology and Geography, Institute of Botany and Ecology, Senior Research Fellow (1,00)
2001–2002   
University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Chair of Plant Ecology, Researcher (1,00)
01.01.2001–31.12.2001   
2001. – … Senior Researcher at the Dept. of Botany and Ecology, University of Tartu
01.01.2000–31.12.2001   
2000. - 2001 research assistant at the Dept. of Botany and Ecology, University of Tartu
01.01.1998–31.12.1999   
Other staff
01.01.1997–31.12.1997   
Other staff
01.01.1996–31.12.1996   
1996 - 1997 research assistant at the Dept. of Botany and Ecology, University of Tartu
 
 
Education
Graduated in biology at the University of Tartu in 1994
MSc - Master of Science in Plant Ecology and Ecophysiology: dissertation 'The richness-standing biomass relationship in Estonian ground-layer plant communities: scale-independent versus scale-dependent approach' at the University of Tartu 1996.
MSc - Master of Science in Biostatistics 'Canopy vertical structure of Estonian herb layer communities' at the Limburgs Universitair Centrum (Belgium) 1999.
PhD - Plant ecology, University of Tartu, 2000. ‘On the determinants of structure and diversity in herbaceous plant communities’
 
 
R&D related managerial and administrative work
2016−...   
Member of the Centre of Excellence EcolChange
1998−...   
Referee in Annales Botanici Fennici, Bulletin of the Geobotanical Institute ETH, Oikos, Journal of Vegetation Science, Ecography, Landscape Ecology
1998−...   
Estonian Statistical Society
1997−...   
Estonian Seminatural Community Conservation Association
1992−...   
Estonian Naturalists' Society
2008−2015   
member of the Centre of Excellence FIBIR
1993−2010   
International Association for Vegetation Science
 
 
Additional information
.

Qualifications

Academic degrees
Jaan Liira, Doctor's Degree, 2000, (sup) Kristjan Zobel, On the determinants of structure and diversity in herbaceous plant communities, University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Chair of Plant Ecology.
Jaan Liira, Research Master's Degree, 1999, (sup) Kristjan Zobel; G. Molenberghs, Canopy vertical structure of Estonian herb layer communities, Limburgi Ülikool (Limburgs Universitair Centrum) (Belgia).
Jaan Liira, Research Master's Degree, 1996, (sup) Kristjan Zobel, 'The richness-standing biomass relationship in Estonian ground-layer plant communities: scale-independent versus scale-dependent approach, University of Tartu, Faculty of Science and Technology (old), Institute of Ecology and Earth Sciences, Tartu University, Chair of Plant Ecology.
 
 
Honours & awards
2012, Jaan Liira, National Science Award, subtopic - agriculture
1998, Jaan Liira, National science award (of Estonian Republic) within the group of Martin Zobel (Univ. of Tartu) "The theory of plant species coexistence and species pool"
 
 
Fields of research
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.4. Ecology, Biosystematics and -physiology; CERCS CLASSIFICATION: B270 Plant ecology
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.5. Forest Sciences
ETIS CLASSIFICATION: 1. Biosciences and Environment; 1.6. Agricultural Sciences
 
 
Additional information
.

Projects in progress

Completed projects

Dissertations under supervision

Supervised dissertations

Publications

1.1. Teadusartiklid, mis on kajastatud Web of Science andmebaasides Science Citation Index Expanded, Social Sciences Citation Index, Arts & Humanities Citation Index, Emerging Sources Citation Index ja/või andmebaasis Scopus (v.a. kogumikud)
 
Tamme, Riin; Pärtel, Meelis; Kõljalg, Urmas; Laanisto, Lauri; Liira, Jaan; Mander, Ülo; Moora, Mari; Niinemets, Ülo; Öpik, Maarja; Ostonen, Ivika; Tedersoo, Leho; Zobel, Martin (2021). Global macroecology of nitrogen‐fixing plants. Global Ecology and Biogeography, 30, 514−526. DOI: 10.1111/geb.13236.
 
Rünk, Kai; Zobel, Kristjan; Liira, Jaan (2021). Long-term growth of three sympatric Dryopteris fern species shows the accumulation of climatic effects over 2 years because of organ preformation. Climatic Change, 164 (16). DOI: 10.1007/s10584-021-02967-8.
 
Valdes, Alicia; Lenoir, Jonathan; De Frenne, Pieter; Andrieu, Emilie; Brunet, Jorg; Chabrerie, Olivier; Cousins, Sara A. O.; Deconchat, Marc; De Smedt, Pallieter; Diekmann, Martin; Ehrmann, Steffen; Gallet-Moron, Emilie; Gaertner, Stefanie; Giffard, Brice; Hansen, Karin; Hermy, Martin; Kolb, Annette; Le Roux, Vincent; Liira, Jaan; Lindgren, Jessica ... Decocq, Guillaume (2020). High ecosystem service delivery potential of small woodlands in agricultural landscapes. Journal of Applied Ecology, 57 (1), 4−16. DOI: 10.1111/1365-2664.13537.
 
Paal, Taavi; Zobel, Kristjan; Liira, Jaan (2020). Standardized response signatures of functional traits pinpoint limiting ecological filters during the migration of forest plant species into wooded corridors. Ecological Indicators, 108, UNSP 105688. DOI: 10.1016/j.ecolind.2019.105688.
 
Vain, Susanna; Gielen, Iris; Liira, Jaan; Zobel, Kristjan (2020). Population-level performance of Arabidopsis thaliana (L.) Heynh in dense monocultures. Journal of Plant Ecology, 13 (2). DOI: 10.1093/jpe/rtaa006.
 
Liira, J.; Suija, A.; Jüriado, I. (2020). Habitat and host specificity of epiphytic lichens in a rural landscape: cultural heritage habitats as refugia. Biodiversity and Conservation. DOI: 10.1007/s10531-020-01955-1.
 
Ingerpuu, Nele; Kupper, Tiiu; Vellak, Kai; Kupper, Priit; Sõber, Jaak; Tullus, Arvo; Zobel, Martin; Liira, Jaan (2019). Response of bryophytes to afforestation, increase of air humidity, and enrichment of soil diaspore bank. Forest Ecology and Management, 432, 64−72. DOI: 10.1016/j.foreco.2018.09.004.
 
Vanneste, Thomas; Valdes, Alicia; Verheyen, Kris; Perring, Michael P.; Bernhardt-Roemermann, Markus; Andrieu, Emilie; Brunet, Jorg; Cousins, Sara A. O.; Deconchat, Marc; De Smedt, Pallieter; Diekmann, Martin; Ehrmann, Steffen; Heinken, Thilo; Hermy, Martin; Kolb, Annette; Lenoir, Jonathan; Liira, Jaan; Naaf, Tobias; Paal, Taavi; Wulf, Monika ... De Frenne, Pieter (2019). Functional trait variation of forest understorey plant communities across Europe. Basic and Applied Ecology, 34, 1−14.10.1016/j.baae.2018.09.004.
 
Ma, Shiyu; De Frenne, Pieter; Vanhellemont, Margot; Wasof, Safaa; Boeckx, Pascal; Brunet, Jörg; Cousins, Sara A.O.; Decocq, Guillaume; Kolb, Annette; Lemke, Isa; Liira, Jaan; Naaf, Tobias; Orczewska, Anna; Plue, Jan; Wulf, Monika; Verheyen, Kris (2019). Local soil characteristics determine the microbial communities under forest understorey plants along a latitudinal gradient. Basic and Applied Ecology, 36, 34−44.10.1016/j.baae.2019.03.001.
 
Liira, J.; Triisberg-Uljas, T.; Karofeld, E.; Karu, H.; Paal, J. (2019). Does the autoecology of core species reflect the synecology of functional groups during the assembly of vegetation in abandoned extracted peatlands? Mires and Peat, 24 (Article 8), 1−14. DOI: 10.19189/MaP.2018.OMB.342.
 
Kose, Marika; Liira, Jaan; Tali, Kadri (2019). Long-term effect of different management regimes on the survival and population structure of Gladiolus imbricatus in Estonian coastal meadows. Global Ecology and Conservation, 20, e00761. DOI: 10.1016/j.gecco.2019.e00761.
 
De Smedt, Pallieter; Baeten, Lander; Gallet-Moron, Emilie; Brunet, Jorg; Cousins, Sara A. O.; Decocq, Guillaume; Deconchat, Marc; Diekman, Martin; Giffard, Brice; Kalda, Oliver; Liira, Jaan; Paal, Taavi; Wulf, Monika; Hermy, Martin; Verheyen, Kris (2019). Forest edges reduce slug (but not snail) activity-density across Western Europe. Pedobiologia, 75, 34−37. DOI: 10.1016/j.pedobi.2019.05.004.
 
Ma, S.; De Frenne, P.; Wasof, S.; Brunet, J.; Cousins, S.A.O.; Decocq, G.; Kolb, A.; Lemke, I; Liira, J.; Naaf, T.; Orczewska, A.; Plue, J.; Wulf, M.; Verheyen, K. (2019). Plant-soil feedbacks of forest understorey plants transplanted in nonlocal soils along a latitudinal gradient. Plant Biology, 21 (4), 677−687. DOI: 10.1111/plb.12960.
 
Ma, S.; De Frenne, P.; Boone, N.; Brunet, J.; Cousins, S.A.O.; Decocq, G.; Kolb, A.; Lemke, I.; Liira, J.; Naaf, T.; Orczewska, A.; Plue, J.; Wulf, M.; Verheyen, K (2019). Plant species identity and soil characteristics determine rhizosphere soil bacteria community composition in European temperate forests. FEMS Microbiology Ecology, 95 (6), ARTN fiz063. DOI: 10.1093/femsec/fiz063.
 
Blondeel, H.; Perring, M.P.; Berges, L.; Brunet, J.; Decocq, G.; Depauw, L.; Diekmann, M.; Landuyt, D.; Liira, J.; Maes, S.L.; Vanhellemont, M.; Wulf, M.; Verheyen, K. (2019). Context-dependency of agricultural legacies in Temperate forest soils. Ecosystems, 22 (4), 781−795. DOI: 10.1007/s10021-018-0302-9.
 
Ehrmann, Steffen, Ruyts, Sanne C., Scherer-Lorenzen, Michael, Bauhus, Jürgen, Brunet, Jörg, Cousins, Sara A. O., Deconchat, Marc, Decocq, Guillaume, De Frenne, Pieter, De Smedt, Pallieter, Diekmann, Martin, Gallet-Moron, Emilie, Gärtner, Stefanie, Hansen, Karin, Kolb, Annette, Lenoir, Jonathan, Lindgren, Jessica, Naaf, Tobias, Paal, TaaviPanning, Marcus, Prinz, Maren, Valdés, Alicia, Verheyen, Kris, Wulf, Monika, Liira, Jaan (2018).

Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments

. Parasites & Vectors, 11, 23.10.1186/s13071-017-2590-x.
 
De Frenne, P; Blondeel, H; Brunet, J; Carón, M. M; Chabrerie, O; Cougnon, M; Cousins, S. A. O; Decocq, G; Diekmann, M; Graae, B. J; Hanley, M. E; Heinken, T; Hermy, M; Kolb, A; Lenoir, J; Liira, J; Orczewska, A; Shevtsova, A; Vanneste, T.; Verheyen, K. (2018). Atmospheric nitrogen deposition on petals enhances seed quality of the forest herb Anemone nemorosa. Plant Biology, 20 (3), 619−626.10.1111/plb.12688.
 
De Smedt, P.; Baeten, L.; Proesmans, W. Berg, MP.; Brunet, J.; Cousins, S.A.O.; Decocq, G.; Deconchat, M.; Diekmann, M.; Gallet-Moron, E.; Giffard, B.; Liira, J.; Martin, L.; Ooms, A.; Valdés, A.; Wulf, M.; Hermy, M.; Bonte, D.; Verheyen, K. (2018). Linking macrodetritivore distribution to desiccation resistance in small forest fragments embedded in agricultural landscapes in Europe. Landscape Ecology, 33 (3), 407−421.10.1007/s10980-017-0607-7.
 
Kütt, Laura; Paal, Taavi; Lõhmus, Kertu; Rammi, Ilmar-Jürgen; Zobel, Kristjan; Liira; Jaan (2018). Multi‐user quality of floral services along a gradient of margin habitats between semi‐natural grasslands and forests. Applied Vegetation Science, 21 (3), 363−372. DOI: 10.1111/avsc.12376.
 
Takkis, Krista; Kull, Tiiu; Hallikma, Tiit; Jaksi, Piia; Kaljund, Karin; Kauer, Karin; Kull, Thea; Kurina, Olavi; Külvik, Mart; Lanno, Kaire; Leht, Malle; Liira, Jaan; Melts, Indrek; Pehlak, Hannes; Raet, Janar; Sammet, Kaarel; Sepp, Kalev; Väli, Ülo; Laanisto, Lauri (2018). Drivers of species richness and community integrity of small forest patches in an agricultural landscape. Journal of Vegetation Science, 29 (6), 978−988. DOI: 10.1111/jvs.12689.
 
Suija, A.; Liira, J. (2017). Community response to alkaline pollution as an adjusting re-assembly between alternative stable states. Journal of Vegetation Science, 28 (3), 527−537.10.1111/jvs.12506.
 
Paal, Taavi; Kütt, Laura; Lõhmus, Kertu; Liira, Jaan (2017). Both spatiotemporal connectivity and habitat quality limit the immigration of forest plants into wooded corridors. Plant Ecology, 218 (4), 417−431.10.1007/s11258-017-0700-7.
 
Plue, Jan; De Frenne, Pieter; Acharya, Kamal; Brunet, Jörg; Chabrerie, Olivier; Decocq, Guillaume; Diekmann, Martin; Graae, Bente J.; Heinken, Thilo; Hermy, Martin; Kolb, Annette; Lemke, Isgard; Liira, Jaan; Naaf, Tobias; Verheyen, Kris; Wulf, Monika; Cousins, Sara A. O. (2017). Where does the community start, and where does it end? Including the seed bank to reassess forest herb layer responses to the environment. Journal of Vegetation Science, 28 (2), 424−435.10.1111/jvs.12493.
 
Ehrmann, Steffen; Liira, Jaan; Gärtner, S.; Hansen, K.; Brunet, J.; Cousins, S. A. O.; Deconchat, M.; Decocq, G.; De Frenne, P.; De Smedt, P.; Diekmann, M.; Gallet-Moron, E.; Kolb, A.; Lenoir, J.; Lindgren, J.; Naaf, T.; Paal, Taavi; Valdés, A.; Verheyen, K.; Wulf, M. ... Scherer-Lorenzen, M. (2017). Environmental drivers of Ixodes ricinus abundance in forest fragments of rural European landscapes. BMC Ecology, 17 (1), 1−31.10.1186/s12898-017-0141-0.
 
Kraut, A.; Liira, J.; Lõhmus, A. (2016). Beyond a minimum substrate supply: sustaining saproxylic beetles in semi-natural forest management. Forest Ecology and Management, 360, 9−19. DOI: 10.1016/j.foreco.2015.10.016.
 
Kütt, Laura; Lõhmus, Kertu; Rammi, Ilmar-Jürgen; Paal, Taavi; Paal, Jaanus; Liira, Jaan (2016). The quality of flower-based ecosystem services in field margins and road verges from human and insect pollinator perspectives. Ecological Indicators, 70, 409−419. DOI: 10.1016/j.ecolind.2016.06.009.
 
Rünk, Kai; Pihkva, Karin; Liira, Jaan; Zobel, Kristjan (2016). Selection of source material for introduction of the locally rare and threatened fern species Asplenium septentrionale. Plant Ecology & Diversity, 9 (2), 167−173.10.1080/17550874.2016.1182225.
 
Emmerson, M.; Morales, M. B.; Onate, J. J.; Batry, P.; Berendse, F.; Liira, J.; Aavik, T.; Guerrero, I.; Bommarco, R.; Eggers, S.; Part, T.; Tscharntke, T.; Weisser, W.; Clement, L.; Bengtsson, J. (2016). How Agricultural Intensification Affects Biodiversity and Ecosystem Services. In: Advances in Ecological Research (43−97). SAN DIEGO: ELSEVIER ACADEMIC PRESS INC. DOI: 10.1016/bs.aecr.2016.08.005.
 
Valdes, A.; Lenoir, J.; Gallet-Moron, E.; Andrieu, E.; Brunet, J.; Chabrerie, O.; Closset-Kopp, D.; Cousins, S. A. O.; Deconchat, M.; De Frenne, P.; De Smedt, P.; Diekmann, M.; Hansen, K.; Hermy, M.; Kolb, A.; Liira, Jaan; Lindgren, J.; Naaf, T.; Paal, Taavi; Prokofieva, I. ... Decocq, G. (2015). The contribution of patch-scale conditions is greater than that of macroclimate in explaining local plant diversity in fragmented forests across Europe. Global Ecology and Biogeography, 24 (9), 1094−1105.10.1111/geb.12345.
 
Kalda, Oliver; Kalda, Rauno; Liira, Jaan (2015). Multi-scale ecology of insectivorous bats in agricultural landscapes. Agriculture Ecosystems & Environment, 199 (1), 105−113. DOI: 10.1016/j.agee.2014.08.028.
 
Kalda, Rauno; Kalda, Oliver; Lõhmus, Kertu; Liira, Jaan (2015). Multi-scale ecology of woodland bat the role of species pool, landscape complexity and stand structure. Biodiversity and Conservation, 24 (2), 337−353. DOI: 10.1007/s10531-014-0811-6.
 
Leppik, E., Jüriado, I., Suija, A. and Liira, J. (2015). Functional ecology of rare and common epigeic lichens in alvar grasslands. Fungal Ecology, 13, 66−76. DOI: 10.1016/j.funeco.2014.08.003.
 
Jüriado, Inga; Leppik, Ede; Lõhmus, Piret; Randlane, Tiina; Liira, Jaan (2015). Epiphytic lichens on Juniperus communis – an unexplored component of biodiversity in threatened alvar grassland. Nordic Journal of Botany, 33 (2), 128−139. DOI: 10.1111/njb.00650.
 
Winqvist, C.; Bengtsson, J.; Öckinger, E.; Aavik, T.; Berendse, F.; Clement, L.W.; Fischer, C.; Flohre, A.; Geiger, F.; Liira, J., Thies, C.; Tscharntke, T.; Weisser, W.W.; Bommarco, R. (2014). Species’ traits influence ground beetle responses to farm and landscape level agricultural intensification in Europe. Journal of Insect Conservation, 18 (5), 837−846. DOI: 10.1007/s10841-014-9690-0.
 
Vellak, Kai; Liira, Jaan; Karofeld, Edgar; Galanina, Olga; Noskova, Maria; Paal, Jaanus (2014). Drastic turnover of bryophyte vegetation on bog microforms initiated by air pollution in northeastern Estonia and bordering Russia. Wetlands, 34 (6), 1097−1108.10.1007/s13157-014-0569-3.
 
Lõhmus, Kertu; Paal, Taavi; Liira, Jaan (2014). Long-term colonization ecology of forest-dwelling species in a fragmented rural landscape – dispersal versus establishment. Ecology and Evolution, 4 (15), 3113−3126.10.1002/ece3.1163.
 
Liira, Jaan; Jürjendal, Iti; Paal, Jaanus (2014). Do forest plants conform to the theory of island biogeography: the case study of bog islands. Biodiversity and Conservation, 23 (4), 1019−1039.10.1007/s10531-014-0650-5.
 
Triisberg, T; Karofeld, E; Liira, J; Orru, M; Ramst, R; Paal, J. (2014). Microtopography and the properties of residual peat are convenient indicators for restoration planning of abandoned extracted peatlands. Restoration Ecology, 22 (1), 31−39.10.1111/rec.12030.
 
Kohv, Kaupo; Zobel, Martin; Liira, Jaan (2013). The resilience of the forest field layer to anthropogenic disturbances depends on site productivity. Canadian Journal of Forest Research, 43 (11), 1040−1049.10.1139/cjfr-2013-0030.
 
Wasof, S.; Lenoir, J.; Gallet-Moron, E.; Jamoneau, A.; Brunet, J.; Cousins, S. A. O.; de Frenne, P.; Diekmann, M.; Hermy, M.; Kolb, A.; Liira, Jaan; Verheyen, K.; Wulf, M.; Decocq, G. (2013). Ecological niche shifts of understorey plants along a latitudinal gradient of temperate forests in north-western Europe. Global Ecology and Biogeography, 22 (10), 1130− 1140.10.1111/geb.12073.
 
Plue, J.; de Frenne, P.; Acharya, K.; Brunet, J.; Chabrerie, O.; Decocq, G.; Diekmann, M.; Graae, B. J.; Heinken, T.; Hermy, M.; Kolb, A.; Lemke, I.; Liira, Jaan; Naaf, T.; Shevtsova, A.; Verheyen, K.; Wulf, M.; Cousins, S. A. O. (2013). Climatic control of forest herb seed banks along a latitudinal gradient. Global Ecology and Biogeography, 22 (10), 1106−1117.10.1111/geb.12068.
 
Palo, Anneli; Ivask, Mari; Liira, Jaan (2013). Biodiversity composition reflects the history of ancient semi-natural woodland and forest habitats - Compilation of an indicator complex for restoration practice. Ecological Indicators, 34, 336−344. DOI: 10.1016/j.ecolind.2013.05.020.
 
Liira, Jaan; Paal, Taavi (2013). Do forest-dwelling plant species disperse along landscape corridors? Plant Ecology, 214 (3), 455−470.10.1007/s11258-013-0182-1.
 
Lõhmus, Kertu; Liira, Jaan (2013). Old rural parks support higher biodiversity than forest remnants. Basic and Applied Ecology, 14 (2), 165−173. DOI: 10.1016/j.baae.2012.12.009.
 
Leppik, E.; Jüriado, I.; Suija, A.; Liira, J. (2013). The conservation of ground layer lichen communities in alvar grasslands and the relevance of substitution habitats. Biodiversity and Conservation, 22 (3), 591−614. DOI: 10.1007/s10531-012-0430-z.
 
Paal, J.; Degtjarenko, P.; Suija, A.; Liira, J. (2013). Vegetation responses to long-term alkaline cement dust pollution in Pinus sylvestris-dominated boreal forests – niche breadth along the soil pH gradient. Applied Vegetation Science, 16 (2), 248−259. DOI: 10.1111/j.1654-109X.2012.01224.x.
 
Öpik, M.; Zobel, M.; Cantero, J.J.; Davison, J.; Facelli, J.M.; Hiiesalu, I.; Jairus, T.; Kalwij, J.M.; Koorem, K.; Leal, M.E.; Liira, J.; Metsis, M.; Neshataeva, V.; Paal, J.; Phosri, C.; Põlme, S.; Reier, Ü.; Saks, Ü.; Schimann, H.; Thiery, O. ... Moora, M. (2013). Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi. Mycorrhiza, 23 (5), 411−430. DOI: 10.1007/s00572-013-0482-2.
 
Liira, J; Ingerpuu, N; Kalamees, R; Moora, M; Pärtel, M; Püssa, K; Roosaluste, E; Saar, L; Tamme, R; Zobel, K; Zobel, M. (2012). Grassland diversity under changing productivity and the underlying mechanisms – results of a 10-yr experiment. Journal of Vegetation Science, 23 (5), 919−930. DOI: 10.1111/j.1654-1103.2012.01409.x.
 
Guerrero, I.; Morales, M.l B.; Oñate, J. J.; Geiger, F.; Berendse, F.; Snoo, G. de; Eggers, S.; Pärt, T.; Bengtsson, J.; Clement, L. W.; Weisser, W. W.; Olszewski, A.; Ceryngier, P.; Hawro, V.; Liira, J.; Aavik, T.; Fischer, C.; Thies, C.; Tscharntke, T. (2012). Response of ground-nesting farmland birds to agricultural intensification across Europe: Landscape and field level management factors. Biological Conservation, 152, 74−80. DOI: 10.1016/j.biocon.2012.04.001.
 
de Bello, F.; Price, J.N.; Münkemüller, T.; Liira, J.; Zobel, M.; Thuiller, W.; Gerhold, P.; Götzenberger, L.; Lavergne, S.; Leps, J.; Zobel, K.; Pärtel, M. (2012). Functional species pool framework to test for biotic effects on community assembly. Ecology, 93 (10), 2263−2273. DOI: 10.1890/11-1394.1.
 
Jüriado, Inga; Karu, Leelia; Liira, Jaan (2012). Habitat conditions and host tree properties affect the occurrence, abundance and fertility of the endangered lichen Lobaria pulmonaria in wooded meadows of Estonia. The Lichenologist, 44 (2), 263−276. DOI: 10.1017/S0024282911000727.
 
Liira, Jaan; Lõhmus, Kertu; Tuisk, Epp (2012). Old manor parks as potential habitats for forest flora in agricultural landscapes of Estonia. Biological Conservation, 146 (1), 144−154.10.1016/j.biocon.2011.11.034.
 
Guerrero, I.; Morales, M.; Onante, J.J.; Aavik, T.; Bengtsson, J.; Berendse, F.; Clement, L.; Dennis, C.; Eggers, S.; Emmerson, M.; Fischer, C.; Flohre, A.; Geiger, F.; Hawro, V.; Inchausti, P.; Kalamees, A.; Kinks, R.; Liira, J.; Melendez, L.; Pärt, T. ... Weisser, W. (2011). Taxonomic and functional diversity of farmland bird communities across Europe: effects of biogeography and agricultural intensification. Biodiversity and Conservation, 20 (14), 3663−3681. DOI: 10.1007/s10531-011-0156-3.
 
De Frenne, P.; Kolb, A.; Graae, B.J.; Decocq, G.; Baltora, S.; De Schrijver, A.; Brunet, J.; Chabrerie, O.; Cousins, S.A.O.; Dhondt, R.; Diekmann, M.; Gruwez, R.; Heinken, T.; Hermy, M.; Liira, J.; , Saguez, R.; Shevtsova, A.; Baskin, C.C.; Verheyen, K. (2011). A latitudinal gradient in seed nutrients of the forest herb Anemone nemorosa. Plant Biology, 13 (3), 493−501.10.1111/j.1438-8677.2010.00404.x.
 
Thies, C.; Haenke, S.; Schreber, C.; Bengtsson, J.; Bommarco, R.; Clemet, L.W.; Ceryngier, P.; Dennis, C.; Emmerson, M.; Gagic, V.; Hawro, V.; Liira, J.; Weisser, W.W.; Winquist, C.; Tscharntke, T. (2011). The relationship between agricultural intensification and biological control: experimental tests across Europe. Ecological Applications, 21 (6), 2187−2196.10.1890/10-0929.1.
 
Paal, J.; Turb, M.; Köster, T.; Rajandu, E.; Liira, J. (2011). Forest land-use history affects the species composition and soil properties of old-aged hillock forests in Estonia. Journal of Forest Research, 16 (3), 244−252.10.1007/s10310-011-0258-5.
 
Liira, J.; Sepp, T.; Kohv, K. (2011). The ecology of tree regeneration in mature and old forests: combined knowledge for sustainable forest management. Journal of Forest Research, 16 (3), 184−193.10.1007/s10310-011-0257-6.
 
Jüriado, I.; Liira, J.; Csencsics, D.; Widmer, I.; Adolf, C.; Kohv, K.; Scheidegger, C. (2011). Dispersal ecology of the endangered woodland lichen Lobaria pulmonaria in managed hemiboreal forest landscape. Biodiversity and Conservation, 20 (8), 1803−1819. DOI: 10.1007/s10531-011-0062-8.
 
Flohre, A.; Fischer, C.; Aavik, T.; Bengtsson, J.; Berendse, F.; Bommarco, R.; Ceryngier, P.; Clement, L.W.; Dennis, C.; Eggers, S.; Emmerson, M.; Geiger, F.; Guerrero, I.; Hawro, V.; Inchausti, P.; Liira, J.; Morales, M.B.; Oñate, J.J.; Pärt, T.; Weisser, W.W. ... Tscharntke, T. (2011). Agricultural intensification and biodiversity partitioning in European landscapes comparing plants, carabids, and birds. Ecological Applications, 21 (5), 1772−1781.
 
Winqvist, C.; Bengtsson, J.; Aavik, T.; Berendse, F.; Clement, L. W.; Eggers, S.; Fischer, C.; Flohre, A.; Geiger, F.; Liira, J.; Pärt, T.; Thies, C.; Tscharntke, T.; Weisser, W. W.; Bommarco, R. (2011). Mixed effects of organic farming and landscape complexity on farmland biodiversity and biological control potential across Europe. Journal of Applied Ecology, 48, 570−579. DOI: 10.1111/j.1365-2664.2010.01950.x.
 
Leppik, E.; Jüriado, I.; Liira, J. (2011). Changes in stand structure due to the cessation of traditional land use in wooded meadows impoverishes epiphytic lichen communities. The Lichenologist, 43, 257−274.
 
Liira, J.; Feldmann, T.; Mäemets, H.; Peterson, U. (2010). Two decades of macrophytes expansion on the shores of a large shallow northern temperate lake - A retrospective series of satellite images. Aquatic Botany, 93 (4), 207−215. DOI: 10.1016/j.aquabot.2010.08.001.
 
Paal, J.; Vellak, K.; Liira, J.; Karofeld, E. (2010). Bog recovery in Northeastern Estonia after the reduction of atmospheric input. Restoration Ecology, 18, 387−400.10.1111/j.1526-100X.2009.00608.x.
 
Liira, J.; Kohv, K. (2010). Stand characteristics and biodiversity indicators along the productivity gradient in boreal forests: Defining a critical set of indicators for the monitoring of habitat nature quality. Plant Biosystems, 144 (1), 211−220.10.1080/11263500903560868.
 
Geiger, F.; Bengtsson, J.; Berendse, F.; Weisser, Wolfgang W.; Emmerson, M.; Morales, M.B.; Ceryngier, P.; Liira, J.; Tscharntke, T. Winqvist, C.; Eggers, S.; Bommarco, R.; Pärt, T.; Bretagnolle, V.; Plantegenest, M.; Clement, L.W.; Dennis, C.; Palmer, C.; Onate, J.J.; Guerrero, I.; Hawro, V. ... Inchausti, P. (2010). Persistent negative effects of pesticides on biodiversity and biological control potential on European farmland. Basic and Applied Ecology, 11 (2), 97−105. DOI: 10.1016/j.baae.2009.12.001.
 
Aavik, T.; Liira, J. (2010). Quantifying the effect of organic farming, field boundary type and landscape structure on the vegetation of field boundaries. Agriculture Ecosystems & Environment, 135 (3), 178−186. DOI: 10.1016/j.agee.2009.09.005.
 
Liira, J.; Issak, M.; Jõgar, Ü.; Mändoja, M.; Zobel, M. (2009). Restoration management of a floodplain meadow and its cost-effectiveness — the results of a 6-year experiment. Annales Botanici Fennici, 46 (5), 397−408.
 
Hendrickx, F.; Maelfait, J.P.; Desender, K.; Aviron, S.; Bailey, D.; Diekotter, T. ; Lens, L.; Liira, J.; Schweiger, O.; Speelmans, M.; VanDomme, V.; Bugter, R. (2009). Pervasive effects of dispersal limitation on within- and among-community species richness in agricultural landscapes. Global Ecology and Biogeography, 18 (5), 607−616. DOI: 10.1111/j.1466-8238.2009.00473.x.
 
Liira, J.; Sepp, T. (2009). Indicators of structural and habitat natural quality in boreo-nemoral forests along the management gradient. Annales Botanici Fennici, 46 (4), 308−325.
 
Jüriado, I.; Liira, J.; Paal, J. (2009). Diversity of epiphytic lichens in boreo-nemoral forests on the North-Estonian limestone escarpment: the effect of tree level factors and local environmental conditions. The Lichenologist, 41 (1), 81−96. DOI: 10.1017/S0024282909007889.
 
Aavik, T.; Liira, J. (2009). Agrotolerant and high nature-value species - plant biodiversity indicator groups in agroecosystems. Ecological Indicators, 9 (5), 892−901. DOI: 10.1016/j.ecolind.2008.10.006.
 
Jüriado, I.; Liira, J.; Paal, J.; Suija, A. (2009). Tree and stand level variables influencing diversity of lichens on temperate broad-leaved trees in boreo-nemoral floodplain forests. Biodiversity and Conservation, 18 (1), 105−125. DOI: 10.1007/s10531-008-9460-y.
 
Schmidt, T.; Arens, P.; Smulders, M.J.M.; Billeter, R.; Liira, J.; Augenstein, I.; Durka, W. (2009). Effects of landscape structure on genetic diversity of Geum urbanum L. populations in agricultural landscapes. Flora, 204 (7), 549−559. DOI: 10.1016/j.flora.2008.07.005.
 
Ejrnaes, R.; Liira, J.; Poulsen, R.; Nygaard, B. (2008). When has an abandoned field become a semi-natural grassland or heathland? Environmental Management, 42 (4), 707−716. DOI: 10.1007/s00267-008-9183-6.
 
Aavik, T.; Jõgar, Ü.; Liira, J.; Tulva, I.; Zobel, M. (2008). Plant diversity in a calcareous wooded meadow – management continuity and colonization debt. Journal of Vegetation Science, 19 (4), 475−484. DOI: 10.3170/2008-8-18380.
 
Aavik, T.; Augenstein, I.; Bailey, D.; Herzog, F.; Zobel, M.; Liira, J. (2008). What is the role of local landscape structure in the vegetation composition of field boundaries? Applied Vegetation Science, 11 (3), 375−386. DOI: 10.3170/2008-7-18486.
 
Gerhold, P.; Pärtel, M.; Liira, J.; Zobel, K.; Prinzing, A. (2008). Phylogenetic structure of local communities predicts the size of the regional species pool. Journal of Ecology, 96 (4), 709−712. DOI: 10.1111/j.1365-2745.2008.01386.x.
 
Liira, J.; Schmidt, T.; Aavik, T.; Arens, P.; Augenstein, I.; Bailey, D.; Billeter, R.; Bukacek, R.; Burel, F.; De Blust, G.; de Cock, R.; Dirksen, J.; Edwards, P.J.; Hamersky, R.; Herzog, F.; Klotz, S.; Kuhn, I.; Le Coeur, D.; Miklova, P.; Roubalova, M. ... Zobel, M. (2008). Plant functional group composition and large-scale species richness in European agricultural landscapes. Journal of Vegetation Science, 19 (1), 3−14.
 
Billeter, R.; Liira, J.; Bailey, D.; Bugter, R.; Arens, P.; Augenstein, I.; Aviron, S.; Baudry, J.; Bukacek, R.; Burel, F.; Cerny, M.; De Blust, G.; de Cock, R.; Diekoetter, T.; Dietz, H.; Dirksen, J.; Dormann, C.; Durka, W.; Frenzel, M.; Hamersky, R. ... Edwards, P. J. (2008). Indicators for biodiversity in agricultural landscapes: a pan-European study. Journal of Applied Ecology, 45 (1), 141−150. DOI: 10.1111/j.1365-2664.2007.01393.x.
 
Dormann, C. F.; Schweiger, O.; Arens, P.; Augenstein, I.; Aviron, S; Bailey, D.; Baudry, J.; Billeter, R.; Bugter, R.; Bukacek, R.; Burel, F.; Cerny, M.; Cock, R. D.; Blust, G. D.; DeFilippi, R.; Diekotter, T.; Dirksen, J.; Durka, W.; Edwards, P. J.; Frenzel, M. ... Zobel, M. (2008). Prediction uncertainty of environmental change effects on temperate European biodiversity. Ecology Letters, 11 (3), 235−244. DOI: 10.1111/j.1461-0248.2007.01142.x.
 
Dormann, C. F.; Schweiger, O.; Augenstein, I.; Bailey, D.; Billeter, R.; De Blust, G.; DeFilippi, R.; Frenzel, M.; Hendrickx, F.; Herzog, F.; Klotz, S.; Liira, J.; Maelfait, J.P.; Schmidt, T.; Speelmans, M.; van Wingerden, W. K. R. E.; Zobel, M. (2007). Effects of landscape structure and land-use intensity on similarity of plant and animal communities. Global Ecology and Biogeography, 16 (6), 774−787. DOI: 10.1111/j.1466-8238.2007.00344.x.
 
Schweiger, O.; Musche, M.; Bailey, D.; Billeter, R.; Diekotter, T.; Hendrickx, F.; Herzog, F.; Liira, J.; Maelfait, J.-P.; Speelmans, M.; Dziock, F. (2007). Functional richness of local hoverfly communities (Diptera, Syrphidae) in response to land use across temperate Europe. Oikos, 116, 3, 461−472. DOI: 10.1111/j.2007.0030-1299.15372.x.
 
Liira, J.; Sepp, T.; Parrest, O. (2007). The forest structure and ecosystem quality in conditions of anthropogenic disturbance along productivity gradient. Forest Ecology and Management, 250, 34−46.
 
Pärtel, M.; Helm, A.; Reitalu, T.; Liira, J.; Zobel, M. (2007). Grassland diversity related to the Late Iron Age human population density. Journal of Ecology, 95 (3), 574−582. DOI: 10.1111/j.1365-2745.2007.01230.x.
 
Moora, M.; Daniell, T.J.; Kalle, H.; Liira, J.; Püssa, K.; Roosaluste, H.; Öpik, M.; Wheatley, R.; Zobel, M. (2007). Spatial pattern and species richness of boreonemoral forest understorey and its determinants – a comparison of differently managed forests. Forest Ecology and Management, 250, 64−70.
 
Hendrickx, F.; Maelfait, J.P.; van Wingerden, W.; Schweiger, O.; Speelmans, M.; Aviron, S.; Augenstein, I.; Billeter, R.; Bailey, D.; Bukacek, R.; Burel, F.; Diekotter, T.; Dirksen, J.; Herzog, F.; Liira, J.; Roubalova, M.; VanDomme, V.; Bugter, R. (2007). How landscape structure, land-use intensity and habitat diversity affect components of total arthropod diversity in agricultural landscapes. Journal of Applied Ecology, 44 (2), 340−351. DOI: 10.1111/j.1365-2664.2006.01270.x.
 
Öpik, M.; Moora, M.; Liira, J.; Zobel, M. (2006). Composition of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe. Journal of Ecology, 94 (4), 778−790.
 
Liira, J.; Püssa, K.; Peterson, U. (2006). The radiance contrast of forest-to-clearcut edges on a medium resolution Landsat Enhanced Thematic Mapper satellite winter image. International Journal of Remote Sensing, 27 (13), 2753−2766.
 
Jüriado, I.; Suija, A.; Liira, J. (2006). Biogeographical determinants of lichen species diversity on islets in the West-Estonian Archipelago. Journal of Vegetation Science, 17 (2), 125−134.
 
Herzog, F.; Steiner, B.; Bailey, D.; Baudry, J.; Billeter, R.; Bukacek, R.; De Blust, G.; De Cock, R.; Dirksen, J.; Dormann, CF.; De Filippi, R.; Frossard, E.; Liira, J.; Schmidt, T.; Stockli, R.; Thenail, C.; van Wingerden, W.; Bugter, R. (2006). Assessing the intensity of temperate European agriculture at the landscape scale. European Journal of Agronomy, 24 (2), 165−181.
 
Zobel, M.; Otsus, M.; Runk, K.; Liira, J. (2005). Can long-distance dispersal shape the local and regional species pool? Folia Geobotanica, 40 (1), 35−44.
 
Ingerpuu, N.; Liira, J.; Partel, M. (2005). Vascular plants facilitated bryophytes in a grassland experiment. Plant Ecology, 180 (1), 69−75.
 
Pussa, K.; Liira, J.; Peterson, U. (2005). The effects of successional age and forest site type on radiance of forest clear-cut communities. Scandinavian Journal of Forest Research, 20, 79−87.
 
Meier, E.; Paal, J.; Liira, J.; Juriado, I. (2005). Influence of tree stand age and management on the species diversity in Estonian eutrophic alvar and boreo-nemoral Pinus sylvestris forests. Scandinavian Journal of Forest Research, 20, 135−144.
 
Puidet, E.; Liira, J.; Paal, J.; Partel, M.; Pihu, S. (2005). Morphological variation in eight taxa of Anthyllis vulneraria s. lato (Fabaceae). Annales Botanici Fennici, 42 (4), 293−304.
 
Lepik, M.; Liira, J.; Zobel, K. (2005). High shoot plasticity favours plant coexistence in herbaceous vegetation. Oecologia, 145 (3), 465−474.
 
Kohv, K.; Liira, J. (2005). Anthropogenic effects on vegetation structure of the boreal forest in Estonia. Scandinavian Journal of Forest Research, 20, 122−134.
 
Schweiger, O.; Maelfait, JP.; Van Wingerden, W.; Hendrickx, F.; Billeter, R.; Speelmans, M.; Augenstein, I.; Aukema, B.; Aviron, S.; Liira, J. (2005). Quantifying the impact of environmental factors on arthropod communities in agricultural landscapes across organizational levels and spatial scales. Journal of Applied Ecology, 42 (6), 1129−1139.
 
Lepik, M.; Liira, J.; Zobel, K. (2004). The space-use strategy of plants with different growth forms, in a field experiment with manipulated nutrients and light. Folia Geobotanica, 39 (2), 113−127.
 
Peterson, U.; Pussa, K.; Liira, J. (2004). Issues related to delineation of forest boundaries on Landsat Thematic Mapper winter images. International Journal of Remote Sensing, 25 (24), 5617−5628.
 
Jüriado, I.; Paal, J.; Liira, J. (2003). Epiphytic and epixylic lichen species diversity in Estonian natural forests. Biodiversity and Conservation, 12, 1587−1607.
 
Vellak, K.; Paal, J.; Liira, J. (2003). Diversity and distribution pattern of bryophytes and vascular plants in a boreal spruce forest. Silva Fennica, 37 (1), 3−13.
 
Cantero, JJ.; Liira, J.; Cisneros, JM.; Gonzalez, J.; Nunez, C.; Petryna, L.; Cholaky, C.; Zobel, M. (2003). Species richness, alien species and plant traits in Central Argentine mountain grasslands. Journal of Vegetation Science, 14 (1), 129−136.
 
Opik, M.; Moora, M.; Liira, J.; Koljalg, U.; Zobel, M.; Sen, R. (2003). Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils. New Phytologist, 160 (3), 581−593.
 
Ingerpuu, N.; Vellak, K.; Liira, J.; Partel, M. (2003). Relationships between species richness patterns in deciduous forests at the north Estonian limestone escarpment. Journal of Vegetation Science, 14 (5), 773−780.
 
Liira, J.; Zobel, K.; Magi, R.; Molenberghs, G. (2002). Vertical structure of herbaceous canopies: the importance of plant growth-form and species-specific traits. Plant Ecology, 163 (1), 123−134.
 
Liira, J.; Zobel, K. (2000). The species richness-biomass relationship in herbaceous plant communities: what difference does the incorporation of root biomass data make? Oikos, 91 (1), 109−114.
 
Partel, M.; Zobel, M.; Liira, J.; Zobel, K. (2000). Species richness limitations in productive and oligotrophic plant communities. Oikos, 90 (1), 191−193.
 
Liira, J.; Zobel, K. (2000). Vertical structure of a species-rich grassland canopy, treated with additional illumination, fertilization and mowing. Plant Ecology, 146 (2), 185−195.
 
Zobel, M.; Otsus, M.; Liira, J.; Moora, M.; Mols, T. (2000). Is small-scale species richness limited by seed availability or microsite availability? Ecology, 81 (12), 3274−3282.
 
Zobel, M.; Pilt, I.; Moora, M.; Partel, M.; Liira, J. (1999). Small-scale dynamics of plant communities in an experimentally polluted and fungicide-treated subarctic birch-pine forest. Acta Oecologica, 20 (1), 29−37.
 
Zobel, K.; Liira, J. (1997). A scale-independent approach to the richness vs biomass relationship in ground-layer plant communities. Oikos, 80 (2), 325−332.
1.2. Teadusartiklid teistes rahvusvahelistes teadusajakirjades, millel on registreeritud kood, rahvusvaheline toimetus, rahvusvahelise kolleegiumiga eelretsenseerimine, rahvusvaheline levik ning kättesaadavus ja avatus kaastöödele
 
Decocq, G; Andrieu, E; Brunet, J; Chabrerie, O; De Frenne, P; De Smedt, P; Deconchat, M; Diekmann, M; Ehrmann, S; Giffard, B; Gorriz Mifsud, E; Hansen, K; Hermy, M; Kolb, A; Lenoir, J; Liira, J; Moldan, F; Prokofieva, I; Rosenqvist, L; Varela, E ... Wulf, M (2016). Ecosystem services from small forest patches in agricultural landscapes. Current Forestry Reports, 2 (1), 30−44. DOI: 10.1007/s40725-016-0028-x.
 
Palo, A.; Hoder, D; Liira, J. (2011). Re-evaluation of stand indicators for the assessment of the representativity status of the Natura 2000 habitat type forests. Estonian Journal of Ecology, 60 (3), 209−224.
 
Jüriado, I.; Liira, J. (2010). Threatened forest lichen Lobaria pulmonaria – its past, present and future in Estonia. Forestry Studies / Metsanduslikud Uurimused, 53, 15−24. DOI: 10.2478/v10132-011-0086-6.
 
Jüriado, I.; Liira, J. (2009). Distribution and habitat ecology of the threatened forest lichen Lobaria pulmonaria in Estonia. Folia Cryptogamica Estonica, 46, 55−65.
 
Sepp, T.; Liira, J. (2009). Vanade salumetsade rohurinde koosseis ja seda mõjutavad tegurid. Metsanduslikud uurimused = Forestry studies, 50, 23−41.
 
Liira, J.; Aavik, T.; Parrest, O.; Zobel, M. (2008). Agricultural sector, rural environment and biodiversity in the central and eastern European EU member states. Landscape & Environment, 2 (1), 46−64.
 
Öpik, M.; Moora, M.; Liira, J.; Rosendahl, S.; Zobel, M. (2006). Comparison of communities of arbscular mycorrhizal fungi in roots of two Viola species. Proceedings of the Estonian Academy of Sciences. Biology. Ecology, 55 (1), 3−14.
1.3. Eelretsenseeritud teadusartiklid Eesti ja teiste riikide eelretsenseeritavates teadusajakirjades, millel on kohalik toimetuskolleegium, või eelretsenseeritud teadusartiklid Eesti kultuurile olulistes ajakirjades või teadusartiklid ajakirjades Akadeemia, Looming ja Vikerkaar.
 
Kull, Tiiu; Liira, Jaan (2011). Eesti elustiku uuringutest viimastel aastakümnetel. Kull, Tiiu; Liira, Jaan; Sammul, Marek (Toim.). Eesti Looduseuurijate Seltsi aastaraamat (176−178).. Tartu: Eesti Looduseuurijate Selts.
2.1. Monograafiad
 
Toom, Mare; Liira, Jaan; Thea, Kull (2016). Tarnad. Eesti Loodusfoto.
3.2. Artiklid/peatükid lisas mitte loetletud kirjastuste välja antud kogumikes
 
Liira, Jaan (2012). Mõisaparkide loodusväärtus tänapäeva maastikus. Tammet, T (Toim.). Eesti parkide almanahh 3 (70−73).. Tallinn: Eesti Keskkonnaministeerium.
 
Liira, Jaan; Peterson, Urmas (2011). Kahe seisundi mõõtmisel moodustunud bimodaalse ühisjaotuse klassifitseerimine. Eesti Statistikaseltsi teabevihik, 21, 8−15.
 
Peterson, Urmas; Liira, Jaan; Budenkova, Julia; Kiviste, Andres (2006). Forest cover changes since mid 1980s in the Eastern Baltic Region, evaluated with multitemporal Landsat imagery. Patterns and Processes in Forest Landscapes. Consequences of human management: 4th Meeting of IUFRO Working Party 8.01.03, Sept. 26-29, Locorotondo, Bari, Italy. Ed. Raffaele Lafortezza and Giovanni Sanesi. Firenze: Accademia Italiana di Scienze Forestali, 393−397.
3.3. Spetsiifilised teadusväljaanded (sõnaraamatud, leksikonid, atlased, määrajad, tekstikriitilised väljaanded);
 
Liira, J.; Settele, J.; Zobel, M. (2010). European Biodiversity and Its Drivers – an "Inter-national" Analysis. In: Settele, J; Penev, L.D.; Georgiev, T.A.; GRabaum, R.; Grobelnik, V.; Hammen, V.; Klotz, S.; Kotarac, (Ed.). Atlas of biodiversity risk (18−21).. Sofia: PENSOFT Publisher.
 
Liira, J. (2009). Olemasolevate koosluste seiremetoodikate hindamine ning soovitusi Natura2000 elupaikade seisundi seiremetoodika edendamiseks. Tartu: Tartu Ülikooli Kirjastus.
3.4. Artiklid/ettekanded, mis on avaldatud valdkonda 3.1. mittekuuluvates konverentsikogumikes
 
Peterson, Urmas; Liira, Jaan (2012). MONITORING OF FOREST AREA CHANGES USING SNOW COVERED SATELLITE IMAGERY IN NORTHERN EUROPE. Proceedings of International Scientific Conference Forests in the Future – Sustainable Use, Risks and Challenges: International Scientific Conference Forests in the Future – Sustainable Use, Risks and Challenges, 4-5 October 2012, Belgrade, Republic of Serbia. Ed. Ljubinko Rakonjac. Belgrade, Republic of Serbia: Institute of Forestry, Belgrade, Serbia, 123−129.
 
Peterson, U.; Liira, J.; Püssa, K. (2005). Rates and patterns of forest cover change since the mid-1980s in the Eastern Baltic region, evaluated with multitemporal Landsat imagery. Proceedings of ForestSat 2005 in Boras, May 31 - June 3. Ed. by Hakan Olsson. Swedish National Board of Forestry. 18−22.
 
Püssa, K.; Liira, J.; Peterson, U. (2005). Transitional and abrupt edges of forest to non-forest boundaries on medium resolution Landsat TM winter images. Proceedings of ForestSat 2005 in Boras, May 31 - June 3.Ed. by Hakan Olsson. Swedish National Board of Forestry. 79−83.
4.1. Kogumike ja ajakirja erinumbrite toimetamine, mis vastavad punktides 1.1, 1.2, 3.1 või 3.2 esitatud nõuetele
 
Kull, Tiiu; Liira, Jaan; Sammul, Marek (2011). Eesti Looduseuurijate aastaraamat: Haruldused Eesti looduses. Tartu: Eesti Looduseuurijate Selts.
5.1. Konverentsiteesid, mida kajastab Thomson Reuters Web of Science
 
Kardakov, A.; Budenkova, J.; Liira, J; Peterson, U. (2014). Farmland abandonment and forest area increase in northeastern Europe. Book of Abstracts: International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change": International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change", August 11-14, 2014, Tartu, Estonia. Ed. Kangur, Ahto; Metslaid, Marek; Moser, W. Keith; Trei, Piret. Tartu: Eesti Maaülikool, 45−45. (40).
 
Budenkova, J.; Kardakov, A.; Liira, J.; Peterson, U. (2014). Cross-border comparison of forest cover changes in northeastern Europe caused by clear-cutting. Book of Abstracts: International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change": International conference "Forest landscape mosaics: disturbance, restoration and management at times of global change", August 11-14, 2014, Tartu, Estonia. Ed. Kangur, Ahto; Metslaid, Marek; Moser, W. Keith; Trei, Piret. Tartu: Eesti Maaülikool, 22−22. (40).
5.2. Konverentsiteesid, mis ei kuulu valdkonda 5.1
 
Vellak, K; Karofeld, E; Liira, J; Paal, J. (2013). Effect of air pollution on bryophyte vegetation of bogs in NE Estonia and NW Russia. Wetland Systems: Ecology, Functioning and Management.: 2013 SWS European Chapter Meeting International Conference "Wetland Systems: Ecology, Functioning and Management"; Padova, Italy; 1-1 September 2013.. Ed. Borin, M; Malagoli, M; Salvato, M; Tanis, B. Padova, 35−36.
 
Jüriado, I.; Leppik, E.; Suija, A.; Liira, J. (2013). The maintenance of the diversity of ground-layer lichens in alvar grasslands and alvar-like habitats. Vegetation patterns & their underlying processes. Abstracts.: 56th IAVS Symposium. 26-30 June 2013, Taru, Estonia. Ed. Püssa, K.; Kalamees, R.; Hallop, K. Tartu, 100.
 
Roosaluste, Elle; Riibak, Kersti; Liira, Jaan; Zobel, Martin (2013). Effects of different management regimes on the herb layer of grassland community. 56th IAVS Symposium. Vegetation Patterns and their Underlying Processes. ABSTRACTS.
 
Liira, Jaan; Lõhmus, Kertu (2012). Conservation value indicators of forests and forest-like habitats in historic agricultural landscapes. Forest in future. Sustainable use, risks and challenges. Serbia 4.-5. oktoober 2012. Ed. Rakonjac, L. Belgrade, Serbia,.
 
Liira, Jaan; Lõhmus, Kertu; Kalda, Rauno; Suija, Ave; Jüriado, Inga; Jürjendal, Iti (2012). Biodiversity in Estonian manor parks. Devepark final conference, Alatskivi, Eesti, 29.07.2012.
 
Lõhmus, Kertu; Liira, Jaan (2012). Conservation value indicators of forests and forest-like habitats in historic agricultural landscapes. The 55th Symposium of the International Association for Vegetation Science, Korea, Mokpo, 2012. Ed. Lee, E.J.; Kang, H.; Cho, K.H.; Son, Y.; Oh, J.G.; Cho, D.S.; Kim, J.W.; Hong, S.K. 196.
 
Leppik, E., Jüriado, I., Suija, A., Liira, J. (2012). Changes in epigeic lichen communities in calcareous grasslands (alvars) due to the cessation of traditional land use. Abstracts. The 7th IAL Symposium. Lichens: from genome to ecosystems in a changing world: The 7th International Association for Lichenology Symposium 2012, Chaophya Park Hotel, Bangkok, Thailand, 9th-13th January 2012. Bankok, Thailand: Ramkhamhaeng University Press, 59.
 
Liira, Jaan; Lõhmus, Kertu (2011). Old manor parks - from cultural heritage to biodiversity conservation. 54th Symposium of the International Association for Vegetation Science, Lyon, Prantsusmaa, 2011. Ed. Bornette, G.; Puijalon, S.
 
Lõhmus, Kertu; Liira, Jaan (2011). The usage of woody habitats by forest plants in historically fragmented landscapes. 54th Symposium of the International Association for Vegetation Science, Lyon, Prantsusmaa, 2011. Ed. Bornette, G.; Puijalon, S.
 
Müür, Mari; Liira, Jaan; Sillasoo, Ülle, Ingerpuu, Nele; Vellak, Kai (2011). Species diversity in mire communities with changed hydrology. 27.
 
Jüriado, I., Leppik, E.; Liira, J.; Suija, A. (2011). Factors controlling the diversity of ground-layer lichens on alvars of western Estonian islands. 54th Symposium of the International Association for Vegetation Science. Vegetation in and around water: patterns, processes and threats.: 54th Symposium of the International Association for Vegetation Science, June 20 - 24, 2011, Lyon, France. Ed. Bornette, G.; Puijalon, S. Universite Claude Bernard. Lyon 1, 161.
 
Palo, A.; Liira, J.; Hoder, D. (2010). Kvaliteediastmete eristamisest loodusdirektiivi metsaelupaigatüüpides. XI Eesti Ökoloogiakonverents „Elurikkus ja ökosüsteemid“ 8.-9. aprillil 2010 Tartus.. http://www.lote.ut.ee/geo/okoloogiakonverents.
 
Jüriado, I.; Liira, J. (2010). Distribution and habitat ecology of the threatened forest lichen Lobaria pulmonaria in Estonia. Proceedings of the Conference Nature Conservation Beyond 2010: Nature Conservation Beyond 2010; Tallinn, Estonia; May 27-29, 2010. Tallinn, 37−38.
 
Liira, J.; Lõhmus, K.; Tuisk, E.; Vellak, K.; Jüriado, I.; Suija, A. (2010). Old manor parks - from cultural heritage to refugia of biodiversity. Proceedings of the Conference Nature Conservation Beyond 2010: Nature Conservation Beyond 2010. May 27-29, Tallinn, 2010. Tallinn, 29−30.
 
Jüriado, I.; Liira, J.; Csencsics, D.; Widmer, I; Adolf, C.; Kohv, K.; Scheidegger, C. (2010). The genetic diversity of Lobaria pulmonaria in woodland habitats of different management history. 9th International Mycological Congress. IMC9: The Biology of Fungi.: 9th International Mycological Congress.1st-6th August, 2010. Edinburgh, Scotland.
 
Lõhmus, K.; Tuisk, E.; Vellak, K.; Jüriado, I.; Suija, A.; Liira, J. (2010). Old manor parks - seminatural forest communities. XXIII Conference-Expedition of the Baltic Botanists. Abstracts & Excursion Guides.: XXIII Conference-Expedition of the Baltic Botanists. Haapsalu, Estonia, July 19-22, 2010. Toim. M. Abakumova, N. Ingerpuu, R. Kalamees, K. Püssa. Tartu, 35−36.
 
Leppik, E.; Jüriado, I.; Suija, A.; Liira, J. (2010). Ground-layer lichen communities on alvars of western Estonian islands. XXIII Conference-Expedition of the Baltic Botanists. Abstracts & Excursion Guides.: XXIII Conference-Expedition of the Baltic Botanists; Haapsalu, Estonia; July 19-22, 2010. Ed. Abakumova, M; Ingerpuu, N; Kalamees, N; Püssa, K. Tartu, 34−35.
 
Jüriado, I.; Liira, J.; Karu, L. (2010). Endangered epiphytic lichen Lobaria pulmonaria along a gradient of different light conditions in semi-natural woodlands. Changing Gradients in Vegetation and the Environment. Abstracts.: International Association for Vegetation Science. 53th International Symposium. Ensenada, Baja California, Mexico, 18-23 April 2010. , 43.
 
Peterson, Urmas; Liira, Jaan; Feldmann, Tõnu; Mäemets, Helle (2009). Patterns and dynamics of coastal vegetation in two great shallow Baltic lakes in multi-temporal satellite images. 2nd European Large Lakes Symposium 2009, Programme and Abstracts: 2nd European Large Lakes Symposium 2009. Vulnerability of large lake ecosystems - monitoring, management and measures. Norrtälje, August 10-14. Uppsala, 11−11.
 
Leppik, E.; Jüriado, I.; Liira, J. (2009). Epiphytic lichen communities reflect the changes of management intensity in wooded meadows of Estonia. International Association for Vegetation Science "Vegetation Processes and Human Impact in a Changing World" Abstracts: 52nd International Symposium, International Association for Vegetation Science; Chania, Greece; 30.05- 4.06.2009. Ed. Coles, S.; Dimopoulos, P. Wiley-Blackwell, 194.
 
Jüriado, I.; Liira, J.; Paal, J.; Suija, A. (2008). Diversity of epiphytic lichens in boreo-nemoral forests in northern Europe: the effect of substrate-related factors and stand environmental conditions. XVII Symposium of the Baltic mycologists and Lichenologists, Abstracts: XVII Symposium of the Baltic mycologists and Lichenologists; Estonia, Saaremaa, Mändjala; 17-21 September 2008. Ed. Saar, I.; Suija, A. Tartu University Publishing, 22.
 
Aavik, T.; Liira, J. (2008). The vegetation of agroecosystems – the role of land use and landscape structure. EURECO-GFOE 2008. Proceedings: EURECO-GFOE 2008. Biodiversity in an Ecosystem Context; Leipzig; 15-19. Sep 2008. Ed. Stadler, J.; Schöppe, F.; Frenzel, M., 737−737.
 
Gerhold, P.; Pärtel, M.; Liira, J.; Zobel, K.; Prinzing, A. (2008). Phylogenetic structure of local communities predicts the size of the regional species pool. Frontiers of Vegetation Science - An Evolutionary Angle: 51st Annual Symposium of the International Association for Vegetation Science. Stellenbosch, South Africa. September 7-12. Toim. Mucina, L.; Kalwij, J.M.; Smith, V.R., pp. 59−60.
 
Aavik, T.; Jõgar, Ü.; Liira, J.; Tulva, I.; Zobel, M. (2008). Plant species composition and diversity in a calcareous wooded meadow - the significance of management continuity. Abstract Book: 6th European Conference on Ecological Restoration. Towards a sustainable future for European ecosystems; Ghent, Belgium: 6th European Conference on Ecological Restoration. Towards a sustainable future for European ecosystems; Ghent, Belgium; 8-12.09.2008. , 153−153.
 
Aavik, T.; Zobel, M.; Liira, J. (2007). The influence of landscape structure on the field margin vegetation of Estonian agricultural landscapes. Book of Abstracts: 49th Annual Conference of the IAVS – New Zealand: New Zealand: New home; new habitat! new ideas? 49th Annual Conference of the IAVS; New Zealand; 12-16.02.2007. Ed. van Essen, R. A., 95−95.
 
Meier, E.; Paal, J. (2007). Cryptogams in Estonian alvar forests: species composition and their substrata in stands of different age and management intensity. Ecological Complexity and Sustainability – Challenges & Opportunities for 21st Century’s Ecology. Abstracts of EcoSummit 2007: EcoSummit 2007; Beijing, China; 22-27.05.2007. Ecological Society of China & Elsevier, 224.
 
Aavik, T.; Zobel, M.; Liira, J. (2007). The effects of landscape structure on the vegetation of field boundaries in Estonia. Proceedings of the 7th IALE World Congress: International Association of Landscape Ecology 2007. 25 Years of Landscape Ecology: Scientific Principles in Practise; Wageningen, Holland; 8-12 July 2007. Ed. Bunce, R.G.H.; Jongman, R.H.G.; Hojas, L.; Weel, S.
 
Meier, Elle; Paal, Jaanus; Liira, Jaan (2004). The influence of stand age and management on species diversity in alvar and boreo-nemoral forests. Natural disturbances and ecosystem-based forest management: proceedings of the international conference: Tartu, Estonia, 27-29 May 2004. Ed. Ahto Kangur. Eesti Põllumajandusülikool, 31−32.
 
Jüriado, I.; Suija, A.; Liira, J. (2004). The environmental factors determining the lichen species richness on islets in the West-Estonian Arhipelago. Book of abstracts of the 5th IAL Symposium "Lichens in Focus": The 5th Symposium of the International Association for Lichenology; Tartu, Estonia; 16-21 August 2004. Toim. Randlane, T.; Saag, A. Tartu Ülikooli Kirjastus, 56.
 
Meier, E.; Paal, J.; Liira, J. (2004). The influence of stand age and management on species diversity in alvar and boreo-nemoral forests. In: Kangur, A. (Ed.). Natural disturbances and ecosystem-based forest management. Proceedings of the International Conference, Tartu, Estonia, 27-29 May 2004 (31−32). Tartu.
6.2. Õpikud ja muud õppeotstarbelised publikatsioonid, v.a. kõrgkooliõpikud;
 
Toom, Mare; Liira, Jaan; Värva, Mall; Ling, Katri; Usler, Marko; Kollist, Ülle; Oja, Tatjana (2006). Metsataimed: Pildikomplekt. Tallinn: Avita.
 
Jõgar, Ülle; Maiste, Piia; Koskaru, Neeme; Liira, Jaan; Paal, Jaanus; Sell, Indrek; Usler, Marko; Hunt, Tiit; Ling, Katri (2006). Vee- ja kaldataimed: pildikomplekt. Tallinn: Avita.
 
Palumets, J.; Hunt, T.; Vissak, P.; Paal, J.; Kask, E.; Liira, J.; Kollist, Ü.; Oja, T. (2006). Sootaimed: pildikomplekt. Tallinn: Avita.
6.3. Populaarteaduslikud artiklid;
 
Liira, Jaan (2016). Pargi loodusväärtuslikkus ja selle edendamine. Palm, P.; Sinijärv, U.; Tammet, T. (Toim.). Eesti parkide almanahh 4 (58−59). Tallinn: Muinsuskaitseamet.
 
Aavik, T; Liira, J. (2009). Kuhu küll kõik lilled jäid? Põlluservade tähtsusest. Eesti Loodus, 7, 46−49.
 
Peterson, Urmas; Liira, Jaan; Püssa, Kersti (2008). Metsaga alade ning lageraiete ja nendega sarnaste häiringute kaugseire. Katrin Väljataga, Karmen Kaukver (Toim.). Kaugseire Eestis (48−68).. Tallinn: Iloprint.
 
Liira, Jaan (2008). Looduse kood. Kodukiri, Märts, 38−42.
6.4. Populaarteaduslikud raamatud;
 
Kalda, Rauno; Liira, Jaan (2016). Nahkhiirte maastik. Palm, P.; Sinijärv, U.; Tammet, T. (Toim.). Eesti parkide almanahh 4 (70−72). Tallinn: Muinsuskaitseamet.
6.7. Muu loome
 
Aavik, T.; Liira, J. (2016). Põllumajanduspoliitika ei suuda pidurdada elurikkuse hüvede kadu. Novaator | ERR.
 
Zobel, M.; Zobel, K.; Pärtel, M.; Moora, M.; Liira, J. (1998). Taimede kooselu - miks liigiline mitmekesisus looduses varieerub? Eesti Vabariigi teaduspreemiad (46−53).. Tallinn: Eesti Teaduste Akadeemia Kirjastus.
6.8. Lühikirjutised teadusajakirjades ja kogumikes
 
Jüriado, I.; Liira, J.; Paal, J. (2009). Diversity of epiphytic lichens in boreo-nemoral forests on the North-Estonian limestone escarpment: the effect of tree level factors and local environmental conditions – ERRATUM. The Lichenologist, 41 (2), 211−211. DOI: 10.1017/S0024282909009190.
2.02.2021

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ProgrammLiikNumberNimiProjekti algusProjekti lõppVastutav täitjaAsutusFinantseerijapoolne rahastamine
1.1.7.4.LLTOM18265 Metsanduse arengukava aastani 2030 alusuuring07.05.201810.09.2018Meelis PärtelTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut22 478,00 EUR
MUUMBGBO06050EAGRIcultural Policy-Induced landscape changes: effects on biodiversity and Ecosystem Services (AGRIPOPES).15.03.200614.03.2009Jaan LiiraTartu Ülikool80 760,04 EUR
1.2.3.4.MLTOM19312R Avalike ökoloogiliste teenuste kvaliteedi tõstmine optimeerides põllumajanduslikke lepinguid01.05.201930.04.2023Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut159 250,00 EUR
MUUSLOOM11199EBiodiversity and ecosystem services of small forest fragments in European landscapes (smallFOREST)01.02.201231.01.2015Jaan LiiraTartu Ülikool56 160,00 EUR
1.1.7.LLTOM19551 Bioloogilise mitmekesisuse andmete analüüs metsade seire andmete põhjal (SMI ja Natura2000 metsaelupaigad)25.09.201920.12.2019Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut6 666,67 EUR
MUULLTOM16240Eksperthinnang rannikuelupaikade seire metoodika eelnõule08.06.201601.11.2016Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut1 000,00 EUR
1.1.7.LLTOM17306Eksperttööd eluslooduse seireprogrammi uuendamise protsessis05.06.201701.12.2017Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut9 500,00 EUR
TKSLTOM16131T (TK131)Globaalmuutuste ökoloogia looduslikes ja põllumajanduskooslustes (TK131)01.01.201601.03.2023Martin ZobelTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut3 198 027,47 EUR
MUULLTOM16410Kvantitatiivse (liigi)seiremetoodika baaskriteeriumite määratlemine09.11.201615.12.2016Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut4 000,00 EUR
PRGPRG1223Liigivaeste ja/või tavaliste liikidega (osa)koosluste ökohüvede pakkumise kujundamine01.01.202131.12.2024Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut183 250,00 EUR
MUULLOOM09098/1Metsaelupaikade seire metoodika kameraalsete metoodikate arendus01.10.201010.12.2010Jaan LiiraTartu Ülikool; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut3 714,86 EUR
ETFETF7878Metsakoosluste kujunemist mõjutavad ökoloogilised ja antropogeensed tegurid põllumajandusmaastikus01.01.200931.12.2012Jaan LiiraTartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond47 121,20 EUR
MUULLOOM09098Olemasolevate seiremetoodikate analüüs ja täiustamine28.08.200915.11.2009Jaan LiiraTartu Ülikool; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond3 758,00 EUR
SFSF0180012s09Organismide elupaiga- ja peremehespetsiifilisus ning sellest lähtuvad uuendused looduskaitsestrateegiates01.01.200931.12.2014Asko LõhmusTartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond830 980,85 EUR
MUULLTOM19399 Osalemine metsanduse arengukava aastani 2030 arengustsenaariumite koostamises10.06.201930.09.2019Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut2 833,33 EUR
MUULLOOM11100Rajatud põlluservade taimestiku uuringu välitööd ja analüüs01.06.201114.11.2011Jaan LiiraTartu Ülikool; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut9 433,20 EUR
ETFETF7816Samblike liigirikkust ja koosseisu mõjutavad tegurid Eesti loopealsetel01.01.200931.10.2014Inga JüriadoTartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond71 346,32 EUR
1.1.7.LLTOM17306Soontaimede seireandmete analüüs10.07.201823.11.2018Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut9 100,00 EUR
IUTIUT20-31Taim-taim interaktsioonide roll rohttaimede evolutsiooniliste muutuste suunajana01.01.201431.12.2019Kristjan ZobelTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut699 600,00 EUR
SFSF0182569s03Taimekoosluste dünaamikat määravad mehhanismid01.01.200331.12.2007Martin ZobelTartu Ülikool, Bioloogia-geograafiateaduskond356 051,79 EUR
ETFETF5849Taimekoosluste väikeseskaalalist struktuuri määravad tegurid: abiootiliste ja biootiliste faktorite roll01.01.200431.12.2007Martin ZobelTartu Ülikool, Bioloogia-geograafiateaduskond70 027,01 EUR
SFSF0180098s08Taimkattemustrid, liiikide kooseksisteerimine ja seda põhjustavad mehhanismid01.01.200831.12.2013Martin ZobelTartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut539 976,71 EUR
MUULLOOM11100/1Toetust saavate rohumaa ribade taimestiku uuringu välitööd ja analüüs01.06.201318.11.2013Jaan LiiraTartu Ülikool; Tartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut8 676,00 EUR
MUULLTOM16192„Rohumaaribade taimestiku uuringu" välitööd ja analüüs09.05.201614.11.2016Jaan LiiraTartu Ülikool, Loodus- ja tehnoloogiateaduskond, Tartu Ülikooli Ökoloogia- ja Maateaduste Instituut11 750,00 EUR
1.1.7.LLTOM19332 „Rohumaaribade taimestiku uuringu" välitööd ja analüüs10.05.201911.11.2019Jaan LiiraTartu Ülikool, Loodus- ja täppisteaduste valdkond, ökoloogia ja maateaduste instituut10 625,00 EUR